Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22290 572 / 0 Endoplasmic reticulum vesicle transporter protein (.1) AT1G36050 215 / 7e-67 Endoplasmic reticulum vesicle transporter protein (.1.2) AT1G22200 208 / 5e-64 Endoplasmic reticulum vesicle transporter protein (.1.2) AT4G27080 91 / 7e-20 ATPDI7, ATPDIL5-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) AT3G20560 87 / 2e-18 ATPDI12, ATPDIL5-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1) AT1G50950 81 / 2e-16 Thioredoxin protein with domain of unknown function (DUF1692) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G022800 [exp] 637 / 0 AT3G22290 574 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Potri.001G206100 [exp] 219 / 2e-68 AT1G36050 540 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.005G168800 [exp] 216 / 3e-67 AT1G36050 724 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.003G023500 [exp] 204 / 2e-62 AT1G36050 521 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.002G094400 [exp] 154 / 5e-43 AT1G36050 692 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.001G419300 [exp] 89 / 2e-19 AT3G20560 761 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1) Potri.011G135500 [exp] 89 / 3e-19 AT4G27080 760 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027795 [exp] 576 / 0 AT3G22290 565 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Lus10023828 [exp] 488 / 3e-174 AT3G22290 478 / 5e-170 Endoplasmic reticulum vesicle transporter protein (.1) Lus10021024 [exp] 442 / 5e-156 AT3G22290 435 / 6e-153 Endoplasmic reticulum vesicle transporter protein (.1) Lus10035503 [exp] 439 / 3e-154 AT3G22290 442 / 1e-155 Endoplasmic reticulum vesicle transporter protein (.1) Lus10036158 [exp] 223 / 6e-69 AT1G36050 596 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10036449 [exp] 214 / 7e-66 AT1G36050 645 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10003406 [exp] 126 / 9e-33 AT1G36050 325 / 2e-109 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10040029 [exp] 88 / 7e-19 AT4G27080 702 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Lus10043062 [exp] 86 / 2e-18 AT4G27080 698 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Lus10011157 [exp] 79 / 8e-16 AT4G27080 718 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07970 [poplar] [flax] COPIIcoated_ERV Endoplasmic reticulum vesicle transporter PF13850 [poplar] [flax] ERGIC_N Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
Representative CDS sequence Show only first row Show all	>Potri.006G023900.2 pacid=42769195 polypeptide=Potri.006G023900.2.p locus=Potri.006G023900 ID=Potri.006G023900.2.v4.1 annot-version=v4.1 ATGGGAATGAAACAAGCTATAAAGAAATTGGATGCGTTTCCTCGTGCAGAAGAGCACCTGTTGCAAAAGACACAATCTGGGGCTCTTGTTTCCATCATTG GGCTAGTCACAATGGCCACGTTGTTCTACCATGAGTTGGCATATTATCTTACTACATATACAGTCCATCAGATGTCTGTAGATTTGACACGTGGAGAAAC TCTTCCAATTCACATTAATATAACATTTCCTTCCTTACCTTGTGATGTTTTGAGTGTGGATGCAATTGACATGTCAGGCAAGCATGAAGTGGATCTTGAT ACAAGCATATGGAAACTTCGCCTGAACAGTTATGGCCATATCACTGGCACTGAGTATTTGTCAGACCTTGTAGAAAAGGAACATGAAGCTCACAACCATG ATCACAATAAAGATCATCATGAGGATTCCCATGCAAAACAGCACACGCATGGCTTTGATGACGCTGCTGAAACTATGGTCAAGAAGGTGAAGCAAGCATT GGCAAATGGAGAAGGATGTCGGGTTTATGGGGTTCTAGATGTCCAAAGGGTTGCTGGCAACTTTCATATTTCAGTTCATGGATTAAACATTTTTGTTGCC CAAATGATTTTTGATGGAGCTAAGCACGTCAATGTAAGTCATATTATCCATGACTTATCATTTGGACCAAAATATCCTGGAATTCACAATCCTCTTGATG GGACAACACGGATTCTGCATGAAACAAGTGGAACATTCAAGTATTACATCAAGATTGTTCCAACCGAGTACAGGTACATCTCCAAAGAAGTTTTGCCAAC TAATCAATTCTCTGTCACTGAGTACTTTTCTCCCATGACTGATTTTGATAGGACATGGCCAGCCGTTTACTTCTTGTATGATTTGTCACCTATCACTGTC ACAATCAAAGAAGAACGGCGCAGTTTTCTTCATTTTATCACTCGGCTCTGTGCGGTTTTAGGTGGTACTTTTGCTTTAACAGGAATGCTAGATAGGTGGA TGTGCAGGCTTCTTGAGGCTCTGACTAAACCTAACCCTAGAAGCGTACTTCGATAA
AA sequence Show only first row Show all	>Potri.006G023900.2 pacid=42769195 polypeptide=Potri.006G023900.2.p locus=Potri.006G023900 ID=Potri.006G023900.2.v4.1 annot-version=v4.1 MGMKQAIKKLDAFPRAEEHLLQKTQSGALVSIIGLVTMATLFYHELAYYLTTYTVHQMSVDLTRGETLPIHINITFPSLPCDVLSVDAIDMSGKHEVDLD TSIWKLRLNSYGHITGTEYLSDLVEKEHEAHNHDHNKDHHEDSHAKQHTHGFDDAAETMVKKVKQALANGEGCRVYGVLDVQRVAGNFHISVHGLNIFVA QMIFDGAKHVNVSHIIHDLSFGPKYPGIHNPLDGTTRILHETSGTFKYYIKIVPTEYRYISKEVLPTNQFSVTEYFSPMTDFDRTWPAVYFLYDLSPITV TIKEERRSFLHFITRLCAVLGGTFALTGMLDRWMCRLLEALTKPNPRSVLR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22290			Endoplasmic reticulum vesicle ...		Potri.006G023900 [exp]	0	1
AT4G31080			Protein of unknown function (D...		Potri.006G281200 [exp]	2.23	0.9319
AT1G14020			O-fucosyltransferase family pr...		Potri.008G090600 [exp]	4.35	0.9380
AT1G04910			O-fucosyltransferase family pr...		Potri.001G316800 [exp]	5.09	0.9222
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Potri.006G214000 [exp]	6.48	0.9292
AT3G07950			rhomboid protein-related (.1)		Potri.010G220900 [exp]	6.92	0.9344
AT1G09330		ECHIDNA, ECH	unknown protein		Potri.005G010400 [exp]	10.09	0.9367
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.004G074500 [exp]	12.72	0.9258
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Potri.003G173200 [exp]	14.17	0.8685	ASY1.1
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Potri.001G278900 [exp]	14.42	0.8865	Pt-SIRANBP.1
AT5G64180			unknown protein		Potri.015G005600 [exp]	14.83	0.9255

Compare expression of checked genes

Potri.006G023900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.