Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60580 361 / 3e-120 RING/U-box superfamily protein (.1.2.3.4) AT3G09760 302 / 3e-97 RING/U-box superfamily protein (.1) AT5G03180 279 / 1e-88 RING/U-box superfamily protein (.1.2) AT3G06330 209 / 2e-64 RING/U-box superfamily protein (.1.2.3) AT5G18760 183 / 1e-52 RING/U-box superfamily protein (.1) AT2G37950 67 / 9e-13 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G01070 65 / 7e-12 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G59000 64 / 2e-11 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G05830 61 / 1e-10 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G34200 52 / 2e-07 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G022900 [exp] 794 / 0 AT5G60580 337 / 7e-111 RING/U-box superfamily protein (.1.2.3.4) Potri.009G013300 [exp] 383 / 2e-128 AT5G60580 492 / 3e-171 RING/U-box superfamily protein (.1.2.3.4) Potri.006G129000 [exp] 377 / 3e-126 AT3G09760 381 / 7e-128 RING/U-box superfamily protein (.1) Potri.010G014950 [exp] 248 / 3e-77 AT3G06330 409 / 5e-141 RING/U-box superfamily protein (.1.2.3) Potri.010G014800 [exp] 246 / 2e-76 AT3G06330 409 / 8e-141 RING/U-box superfamily protein (.1.2.3) Potri.008G196400 [exp] 215 / 2e-64 AT3G06330 377 / 3e-128 RING/U-box superfamily protein (.1.2.3) Potri.010G195100 [exp] 67 / 8e-13 AT5G05830 206 / 9e-68 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G094000 [exp] 66 / 6e-12 AT5G05830 192 / 8e-62 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.016G105900 [exp] 66 / 7e-12 AT5G05830 191 / 2e-61 RING/FYVE/PHD zinc finger superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026501 [exp] 369 / 1e-122 AT3G09760 414 / 5e-140 RING/U-box superfamily protein (.1) Lus10037410 [exp] 365 / 6e-121 AT5G60580 506 / 2e-176 RING/U-box superfamily protein (.1.2.3.4) Lus10021482 [exp] 351 / 2e-116 AT5G60580 469 / 6e-163 RING/U-box superfamily protein (.1.2.3.4) Lus10022585 [exp] 344 / 1e-113 AT5G60580 474 / 1e-164 RING/U-box superfamily protein (.1.2.3.4) Lus10041301 [exp] 358 / 2e-111 AT2G28450 878 / 0.0 zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10019931 [exp] 308 / 7e-99 AT3G09760 360 / 2e-119 RING/U-box superfamily protein (.1) Lus10012791 [exp] 230 / 6e-70 AT3G06330 388 / 3e-132 RING/U-box superfamily protein (.1.2.3) Lus10033985 [exp] 230 / 7e-67 AT3G06330 384 / 7e-126 RING/U-box superfamily protein (.1.2.3) Lus10038632 [exp] 204 / 3e-60 AT3G06330 328 / 3e-109 RING/U-box superfamily protein (.1.2.3) Lus10012793 [exp] 146 / 2e-40 AT3G06330 192 / 8e-61 RING/U-box superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF12906 [poplar] [flax] RINGv RING-variant domain
Representative CDS sequence Show only first row Show all	>Potri.006G024000.2 pacid=42770318 polypeptide=Potri.006G024000.2.p locus=Potri.006G024000 ID=Potri.006G024000.2.v4.1 annot-version=v4.1 ATGGAAGAAAATTCAGCTGCCAAACACCAAGATTCCACGTCAGATTCCCCTGATCATTCTCAGGTTGGTTCGAGGAAACCGAACCTGAGTTCACTACAAA TACCGGCAAGGTCGTCGTCGTTGGAAGCAGAATTCACGAGAATCGAAATCACTCAATGCCCTAGCCCAGCTAAACCAGGCCTGCCGCCGCGGCCGAATTC AGCTAAATTTAAATCGACGGTGAAGAATTTGCCTCCACAGAGAAGTTTAAAGGCGAAAGCTTTATCAGAAGATGGTGAAAAAACTGTCTTGATTGTTCCT GATACGCCGCCGTCTGATAGTCCGGCTGCTAAGCCTTCTACCTCTCGGTCGTTTTCGCTTAATAAAGTTCTGTTTCCGTTAAAACCGGCGAATTCTTTGC CTGTTACGCCGTGTGGGAATTCGGATCCTGAGGCGGTGCTGGAGAGGAATATTAATTCTTATTCTGATGATAAGGTAGAAGTACGGCATCATATAAAGCG GTCGTTGTCAGTTCCGGTGAATATAAAGACTAGAAGTTTAAGACGGACCGAGTCAGGTGGAGGTTTGTTTCGTGTGGTCTTGGCGACTCCACGTCCGGTG GCAGCTGATAGCACGTCTACTAATGATGCCTCGGCGATTGAAACCGCGAGTGAAGATGATGGTGAAGATATTCCTGAAGATGAAGCGGTTTGTAGAATTT GTTTGGTTGAGCTCAGTGAAGGAGGTGATACTTTGAAGATGGAATGTAGTTGTAAAGGAGAGCTTGCGCTTGGGCATCAGCAATGTGCTGTGAAGTGGTT TAGCATCAAAGGAAACAAGACATGTGATGTTTGTAGGCAAGATGTTCGGAATCTGCCTGTAACATTGCTAAAGATACATAATCCTCAAGCAGCTGGTAGG AGGCCATTAACTGTATCTCAGCAGAGGGAGGTCACTCGTTATAGGGTTTGGCAGGATGTGCCAGTTCTTGTCATGGTCAGCGTGCTAGCATATTTCTGCT TTCTGGAGCAACTACTGGTATCTGACTTGGGCCCTCGTGCTCTTGCCATTTCATTGCCTTTCTCTTGTGTTTTAGGTCTCCTTTCTTCCATGATCGCTTC CACCATGGTAAGCAGGAGTTACATATGGGCTTATGCTTCCTTCCAGTTTGCCGTAGTCATCTTGTTCGCTCATATTTTTTATACTGTGCTCAATGTGAAC CCTATACTCTCTGTCCTGCTATCCTCATTCACTGGTTTTGGGATTGCAATTAGCACAAACTCTCTTCTTGTGGAGTGCCTGAGGTGGAGGGCAAGCAGGC AATTGCAATCTTCCCATCAGCAAAATGACAGAGCTATGCAGCAGGCGCAGCTACTGCAACAACAACAGTCCATGCAGACATGGCAGCAAGAGAATCAACA ACCCAGACAACAATCCATTGAAGATTCCAATGTTGGACCTATTGATAGCTCAAGGCAACACGAAGCTATAATCCAGAATACGTAG
AA sequence Show only first row Show all	>Potri.006G024000.2 pacid=42770318 polypeptide=Potri.006G024000.2.p locus=Potri.006G024000 ID=Potri.006G024000.2.v4.1 annot-version=v4.1 MEENSAAKHQDSTSDSPDHSQVGSRKPNLSSLQIPARSSSLEAEFTRIEITQCPSPAKPGLPPRPNSAKFKSTVKNLPPQRSLKAKALSEDGEKTVLIVP DTPPSDSPAAKPSTSRSFSLNKVLFPLKPANSLPVTPCGNSDPEAVLERNINSYSDDKVEVRHHIKRSLSVPVNIKTRSLRRTESGGGLFRVVLATPRPV AADSTSTNDASAIETASEDDGEDIPEDEAVCRICLVELSEGGDTLKMECSCKGELALGHQQCAVKWFSIKGNKTCDVCRQDVRNLPVTLLKIHNPQAAGR RPLTVSQQREVTRYRVWQDVPVLVMVSVLAYFCFLEQLLVSDLGPRALAISLPFSCVLGLLSSMIASTMVSRSYIWAYASFQFAVVILFAHIFYTVLNVN PILSVLLSSFTGFGIAISTNSLLVECLRWRASRQLQSSHQQNDRAMQQAQLLQQQQSMQTWQQENQQPRQQSIEDSNVGPIDSSRQHEAIIQNT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60580			RING/U-box superfamily protein...		Potri.006G024000 [exp]	0	1
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.004G157800 [exp]	2.23	0.9284
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Potri.001G214201 [exp]	2.82	0.9153
AT3G49550			unknown protein		Potri.012G004900 [exp]	5.29	0.9113
AT3G26000			Ribonuclease inhibitor (.1)		Potri.008G179800 [exp]	6.78	0.8952
					Potri.011G070800 [exp]	10.58	0.9020
AT2G30050			transducin family protein / WD...		Potri.008G141300 [exp]	10.67	0.9257
AT3G54120			Reticulon family protein (.1)		Potri.016G110200 [exp]	13.07	0.9202
AT2G32730			26S proteasome regulatory comp...		Potri.004G183675 [exp]	13.07	0.8972
AT3G18480		AtCASP	CCAAT-displacement protein alt...		Potri.012G061000 [exp]	14.49	0.9080
AT3G50590			Transducin/WD40 repeat-like su...		Potri.005G136300 [exp]	16.43	0.9126

Compare expression of checked genes

Potri.006G024000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.