Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22330 653 / 0 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1) AT3G22310 643 / 0 ATRH9, PMH1 RNA HELICASE 9, putative mitochondrial RNA helicase 1 (.1) AT5G26742 469 / 1e-157 EMB1138 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) AT5G62190 299 / 1e-92 PRH75 DEAD box RNA helicase (PRH75) (.1) AT1G55150 256 / 2e-78 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 246 / 2e-73 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G14610 242 / 1e-71 DEAD box RNA helicase family protein (.1.2) AT3G01540 240 / 6e-71 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT1G31970 236 / 2e-70 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT3G06480 239 / 4e-68 DEAD box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G023100 [exp] 833 / 0 AT3G22330 648 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.005G000500 [exp] 476 / 1e-159 AT5G26742 885 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.005G000100 [exp] 475 / 2e-159 AT5G26742 924 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.015G133400 [exp] 300 / 6e-93 AT5G62190 785 / 0.0 DEAD box RNA helicase (PRH75) (.1) Potri.012G131000 [exp] 296 / 2e-91 AT5G62190 794 / 0.0 DEAD box RNA helicase (PRH75) (.1) Potri.003G038300 [exp] 248 / 5e-75 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.013G158000 [exp] 244 / 3e-73 AT1G55150 322 / 3e-104 DEA(D/H)-box RNA helicase family protein (.1) Potri.019G130900 [exp] 244 / 4e-73 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.003G098800 [exp] 238 / 6e-71 AT1G31970 726 / 0.0 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031012 [exp] 664 / 0 AT3G22330 690 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10035410 [exp] 662 / 0 AT3G22330 692 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10027268 [exp] 634 / 0 AT3G22330 632 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10038975 [exp] 632 / 0 AT3G22330 639 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10001057 [exp] 478 / 4e-161 AT5G26742 919 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10001425 [exp] 437 / 2e-145 AT5G26742 859 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10038898 [exp] 302 / 1e-93 AT5G62190 768 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10015020 [exp] 300 / 5e-93 AT5G62190 778 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10027388 [exp] 300 / 7e-93 AT5G62190 804 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10031683 [exp] 263 / 6e-79 AT5G62190 748 / 0.0 DEAD box RNA helicase (PRH75) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G024100.1 pacid=42769549 polypeptide=Potri.006G024100.1.p locus=Potri.006G024100 ID=Potri.006G024100.1.v4.1 annot-version=v4.1 ATGTTGTCAACAATTCTAAGAAGATCATCCTCTTCTTATGCGTTAGCCCCAAATCGGGCTATAGCCGCCATAACCCTCCTACACCACCTCCAATTAACGC CTGCTACGTCACCAGTTCCTTCCAGAAATGGGTCTCTCCCCGGTGAGATTAGACCCTTTTCTTCATTTCTTACTTCTCCAACCATATCTAGAGACTTTCA TGTAAAATCTGGGCCGTTGGATTTTAAGGCGAGTTCGGTGACTCAAGCTGGGATCGCTGTAGCTGATTATGGCTCTGATGAGGAGAAAGGGAAAGGGAGC GAAGAAGGGCTTGAAATTTCAAATTTAGGGATTTCTAAAGAGATTGTTAACTCTTTAGCTAAAAAAGGGATAACTAAACTGTTTCCCATTCAGAAAGCTG TGCTTGAACCGGCAATGCAAGGGAAGGACATGTTTGGCCGAGCTCGAACAGGAACAGGAAAAACACTTGCTTTTGGAATCCCTATACTCGATAAAATTAT AGAATTTAACAAGCAACATGGGAAAGGGAGGAACCCGTTGGCAATGGTTATGGCTCCAACAAGAGAACTTGCAAGACAAGTACAGAAGGAGTTTCATGAT TCTGCGCCTAGTTTGGATACCATATGTTTATATGGGGGTGTTCCTATTTCAAGCCAAATGAGGGAGCTTGAATATGGTGTTGATGTTGTTGTTGGCACAC CTGGTCGTATTATTGATCTGATGAAGAGGGGTTCGCTTAATTTGTCAGAAATTAAGTATGTTGTTCTTGACGAAGCTGATCAGATGCTTGGTGTGGGATT TGTTGATGATATTGAGACAATCTTGTCAAGGTTACCTAAGAAGCGGCATAGCATGTGCTTCTCTGCTACAATGCCAAGTTGGATCAAACAACTTGTTAGG AAGTACCTAAAAGATCCGCTGACTATTGATCTTGTTGGAGATTCTGATAGAAAGCTGGCTGATGGAATTACCCTCTATTCAATAGCTTCAGACATGTATG CAAAAGCATCAATTCTTGGTCCTCTGATTACAGAACATGCAAAAGGAGGAAAGTGCATTGTTTTTACTGAAACAAAGCGTGATGCTGATCGATTAGCATA TGCCATGGCAAAGAACCATAAATGTGAGGCTTTACATGGAGATATTTCACAGAATGTGAGAGAAAGGACACTTTCAGGCTTCCGAGAGGGACATTTCAAT ATTCTAGTTGCCACTGATGTTGCGGCTCGTGGTCTTGATGTCCCTAATGTTGATCTGATAATACATTATGCACTTCCTAGATGTTCAGAGACTTTTGTTC ATCGATCTGGCCGTACTGGTCGTGCTGGGAAGAAGGGAACTGCAATTCTTATTTATACTCAAGAAGATGCCAGGCAAGTCAAGTTAATTGAACGGGACAC AGGGTGCAGATTTTCGGAGCTCCCTAAAATCGCTGTCGATGGTGCAAGCTTAGACATGCACAATGACTTGGGTCGTGGACGATCTAACTCATCTGGAGGG TTTGGTAACCGCGGATATGGATCTGGGCAAGGCTCCAGGAATTCTGGCTTTGGCCGTTCTAATGGTCAATTTTCTGGATCCAGTCAAGGTGGTTATAACA GAAACAAAACAGGGAATTTTGGTCGTTCTGGCAGCTTTGGTGAGTCGGGTAGATCAGACCGTTCAAGCACTTTTGGGGACTTTGGTTCAGGCCGTTCAAG CACTTTTGGGGACTTTGGTTCAGGACGTTCTAGTGGAAAGCAGAAGGTTCCTGCTTTTGATCCTTTTGGGGACTCTGACTAG
AA sequence Show only first row Show all	>Potri.006G024100.1 pacid=42769549 polypeptide=Potri.006G024100.1.p locus=Potri.006G024100 ID=Potri.006G024100.1.v4.1 annot-version=v4.1 MLSTILRRSSSSYALAPNRAIAAITLLHHLQLTPATSPVPSRNGSLPGEIRPFSSFLTSPTISRDFHVKSGPLDFKASSVTQAGIAVADYGSDEEKGKGS EEGLEISNLGISKEIVNSLAKKGITKLFPIQKAVLEPAMQGKDMFGRARTGTGKTLAFGIPILDKIIEFNKQHGKGRNPLAMVMAPTRELARQVQKEFHD SAPSLDTICLYGGVPISSQMRELEYGVDVVVGTPGRIIDLMKRGSLNLSEIKYVVLDEADQMLGVGFVDDIETILSRLPKKRHSMCFSATMPSWIKQLVR KYLKDPLTIDLVGDSDRKLADGITLYSIASDMYAKASILGPLITEHAKGGKCIVFTETKRDADRLAYAMAKNHKCEALHGDISQNVRERTLSGFREGHFN ILVATDVAARGLDVPNVDLIIHYALPRCSETFVHRSGRTGRAGKKGTAILIYTQEDARQVKLIERDTGCRFSELPKIAVDGASLDMHNDLGRGRSNSSGG FGNRGYGSGQGSRNSGFGRSNGQFSGSSQGGYNRNKTGNFGRSGSFGESGRSDRSSTFGDFGSGRSSTFGDFGSGRSSGKQKVPAFDPFGDSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Potri.006G024100 [exp]	0	1
AT5G09840			Putative endonuclease or glyco...		Potri.001G307700 [exp]	1.41	0.9377
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Potri.008G043400 [exp]	1.73	0.9351
AT1G55040			zinc finger (Ran-binding) fami...		Potri.013G022300 [exp]	2.44	0.9373
AT1G04945			HIT-type Zinc finger family pr...		Potri.001G228000 [exp]	6.24	0.9061
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Potri.004G227800 [exp]	6.63	0.9094
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Potri.008G012250 [exp]	6.70	0.9130
AT2G15630			Pentatricopeptide repeat (PPR)...		Potri.004G147700 [exp]	8.00	0.9315
AT1G72280		AERO1	endoplasmic reticulum oxidored...		Potri.011G139900 [exp]	8.00	0.8654	Pt-AERO1.2
AT4G10620			P-loop containing nucleoside t...		Potri.001G010400 [exp]	9.16	0.9168
AT1G31660			unknown protein		Potri.011G112500 [exp]	9.38	0.8928

Compare expression of checked genes

Potri.006G024100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.