Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CDC2.5
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10270 711 / 0 CDKC;1 cyclin-dependent kinase C;1 (.1) AT5G64960 701 / 0 CDKC2, CDKC;2 Cyclin-dependent kinase C;2, cyclin dependent kinase group C2 (.1.2) AT1G71530 356 / 2e-118 Protein kinase superfamily protein (.1.2) AT1G53050 361 / 2e-117 Protein kinase superfamily protein (.1) AT5G50860 354 / 4e-116 Protein kinase superfamily protein (.1) AT5G44290 354 / 4e-115 Protein kinase superfamily protein (.1.2.3.4) AT1G03740 354 / 2e-114 Protein kinase superfamily protein (.1.2) AT1G33770 342 / 6e-111 Protein kinase superfamily protein (.1) AT1G54610 339 / 2e-110 Protein kinase superfamily protein (.1.2.3) AT1G74330 342 / 4e-110 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G003700 [exp] 754 / 0 AT5G10270 661 / 0.0 cyclin-dependent kinase C;1 (.1) Potri.015G103300 [exp] 363 / 2e-119 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.013G032200 [exp] 362 / 7e-119 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.012G103900 [exp] 359 / 7e-118 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1) Potri.011G119400 [exp] 361 / 4e-117 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.019G073100 [exp] 359 / 4e-117 AT1G71530 740 / 0.0 Protein kinase superfamily protein (.1.2) Potri.005G045500 [exp] 357 / 4e-117 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.008G204400 [exp] 354 / 3e-116 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G100100 [exp] 355 / 2e-115 AT1G71530 722 / 0.0 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022043 [exp] 758 / 0 AT5G10270 710 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10042588 [exp] 737 / 0 AT5G10270 712 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10036106 [exp] 729 / 0 AT5G10270 689 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10026790 [exp] 720 / 0 AT5G10270 675 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10039836 [exp] 357 / 2e-116 AT1G53050 633 / 0.0 Protein kinase superfamily protein (.1) Lus10035892 [exp] 353 / 2e-115 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10001715 [exp] 352 / 3e-115 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10012805 [exp] 352 / 5e-115 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10025773 [exp] 355 / 1e-114 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10033684 [exp] 354 / 3e-114 AT1G53050 668 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.006G024600.1 pacid=42769288 polypeptide=Potri.006G024600.1.p locus=Potri.006G024600 ID=Potri.006G024600.1.v4.1 annot-version=v4.1 ATGGCAATAGCAGCTCCTGGGCAGCTGAATTTAAACGAATCACCATCATGGGGATCTAGAAGTGTAGATTGTTTTGAAAAATTAGAACAAATTGGTGAAG GCACTTATGGGCAAGTGTATATGGCAAGAGAAATAAAGACAGGTGAAATTGTTGCTTTGAAGAAAATAAGAATGGACAATGAGAGAGAAGGGTTTCCTAT AACAGCAATAAGGGAGATCAAGATTTTAAAGAAATTACATCACGAGAATGTGATTAACTTGAAAGAGATTGTGACTTCTCCAGGTCCAGAGAGGGATGAG CAGGGGAGACCAGATGGTAACAAGTATAAAGGTGGGATCTACATGGTTTTTGAATACATGGATCATGATTTGACTGGTCTCGCTGATCGTCCTGGGATGA GGTTTTCAGTTCCCCAAATTAAGTGCTACATGAGGCAACTTTTGACGGGGCTTCACTATTGTCATGTGAATCAAGTGCTTCATCGTGATATAAAAGGTTC TAATCTGCTCATAGACAATGAGGGTAATTTGAAGCTGGCAGATTTTGGGCTTGCTCGGTCATTCTCAAATGATCACAATGCAAATCTTACAAATCGCGTT ATTACTTTATGGTACAGACCCCCAGAGTTGCTGCTTGGGACAACAAAGTATGGTCCAGCTGTTGATATGTGGTCTGTTGGTTGTATTTTTGCTGAACTTC TCCATGGGAAACCAATTTTCCCTGGAAAAGATGAACCAGAACAACTAAATAAGATTTTTGAGCTATGTGGAGCCCCTGATGAGTTTAATTGGCCTGGAGT TTCCAAGATTCCTTGGTACAACAATCTCAAGCCAACAAGGCCAATGAAGAGGCGTCTAAGAGAGGTTTTCAGACATTTTGACCGTAATGCTTTGGAGTTA TTGGAGAAAATGCTGACTCTTGATCCCTCTGAGAGAATATCTGCCAAGGATGCACTTGATGCTGAGTATTTCTGGACTGATCCATTACCTTGCAACCCCA AAAGTTTGCCGAAATATGAAGCATCACATGAGTTTCAGACTAAGAAAAAACGTCAGCAACTAAGGCAGCATGAAGAAAATGCTAAGCGTCAGAAACTGCA GCACCAGCAGCAGCATGGTCGGCTTCCCCCCACTCAACAGTCTGGGCAGGCACATCCACAAATGCGTTCAGGCCCTAATCAGCCCTTGCATAGTTCTCAG CCCCCGGTTGCTGCTGGGCCTAGCCACCATTATGGGAAGCCTCGAGGACCTGCTGGCGGACCAGGCAGATACCCCCCAAGTGGAACAAGCGGGGGATACA ACCACCCTAATCGTGGTGGTCAAGGTAGCGGTGGTTATGGTAGTGGGCCATATCCTCCACAGGGGCGAGCTCCACCGTATGGCTCAAGTAGTATGCCTGG TGCACCTCCACATGGGAGTGGAGGGGGTAGTGGCTATGGAGTTGGTGGTCCAAATTATCCTCAAGGTGGTCCACCTTATGGTGGTTCTGGTGCTGGTCGT GGTTCGAACATGATGGGTGGAAACCGCAACCAACAATATGGTTGGCAGCAGTAA
AA sequence Show only first row Show all	>Potri.006G024600.1 pacid=42769288 polypeptide=Potri.006G024600.1.p locus=Potri.006G024600 ID=Potri.006G024600.1.v4.1 annot-version=v4.1 MAIAAPGQLNLNESPSWGSRSVDCFEKLEQIGEGTYGQVYMAREIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVINLKEIVTSPGPERDE QGRPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRV ITLWYRPPELLLGTTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEFNWPGVSKIPWYNNLKPTRPMKRRLREVFRHFDRNALEL LEKMLTLDPSERISAKDALDAEYFWTDPLPCNPKSLPKYEASHEFQTKKKRQQLRQHEENAKRQKLQHQQQHGRLPPTQQSGQAHPQMRSGPNQPLHSSQ PPVAAGPSHHYGKPRGPAGGPGRYPPSGTSGGYNHPNRGGQGSGGYGSGPYPPQGRAPPYGSSSMPGAPPHGSGGGSGYGVGGPNYPQGGPPYGGSGAGR GSNMMGGNRNQQYGWQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10270		CDKC;1	cyclin-dependent kinase C;1 (....		Potri.006G024600 [exp]	0	1	Pt-CDC2.5
AT5G03670			unknown protein		Potri.006G115300 [exp]	9.48	0.7875
AT3G15095		HCF243	high chlorophyll fluorescence ...		Potri.001G373100 [exp]	11.22	0.7890
AT2G37195			unknown protein		Potri.016G090000 [exp]	13.19	0.8486
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Potri.001G392601 [exp]	13.41	0.7945
AT5G36740			Acyl-CoA N-acyltransferase wit...		Potri.002G051400 [exp]	14.07	0.8738
AT4G31880			unknown protein		Potri.018G109600 [exp]	14.89	0.8537
AT5G47680		AtTRM, TRM10	tRNA modification 10, unknown ...		Potri.016G005500 [exp]	15.58	0.8348
AT3G54500			unknown protein		Potri.003G200300 [exp]	23.40	0.8527
AT3G20550	FHA	DDL	DAWDLE, SMAD/FHA domain-contai...		Potri.011G136102 [exp]	23.91	0.7876
AT2G43330		ATINT1	inositol transporter 1 (.1)		Potri.017G032600 [exp]	25.09	0.8178

Compare expression of checked genes

Potri.006G024600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.