Plant FIBer expression Database

Potri.006G025200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G41120 257 / 3e-86 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033361
[exp]
223 / 4e-72 AT2G41120 218 / 2e-70 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03745 DUF309 Domain of unknown function (DUF309)
Representative CDS sequence
>Potri.006G025200.1 pacid=42767190 polypeptide=Potri.006G025200.1.p locus=Potri.006G025200 ID=Potri.006G025200.1.v4.1 annot-version=v4.1
ATGGCAACAATTCTCAAGTTTCTCCCCATCTCATCATCATTATCCATTTTACCAAGTTCCTATGTCCTTTCATCGATCCACAGCAAATCATCAATCAACT
TTTCATCTTTGTCTAAGAGAGCTCATCATCCTCTAGTCTCTTCGATATTTAAACAAGACACTACTAGAAAATATTCCACTTCCTTTCGCATATCTTATAG
ATATTACAGCGTGGAAGATGATGGTGAGGAGAATTGTAGCTTTGAAGAAGCAGCTGCCCTTTTCAACAAGAGGGAATACTACAAGTGCCATGATGTTCTT
GAAGCTTTGTGGATTAAAGCAGAAGAGCCCACTAGGACTCTTTTCCATGGGATTCTTCAGTGTGCTGTTGGATTCCATCACCTCTTCAACCAGAATCATA
AAGGAGCAATGATGGAGTTGGGAGAGGGACTGTGTAAGCTGAAAAGGATGGATTTTGAGAGTGGACCTTTTCATCAGTTTGAGCAGGAGATTTCTGCAGC
CCTTGATTTTATTTACCTCACTCAGATTGAGCTAGCTGCTTGTGGAGATGATCTATGTTTGGCAATGTATCAATCAGAGAGATCATACCAACTTCTTGGA
GCCTATGCTGCTGGGCAACATTTGTACAGGCTGCAAAACAACCCTAATGATGGTACATACATAGTTTTCCGTCCTCAGATCAGTTCTTATTCTGGTGAGC
CACAAAAAGTAAAGCTTCCAACCCTTAATGCAGCAGACGAACATCTTATAGCCTACGAATTTAAGTGA
AA sequence
>Potri.006G025200.1 pacid=42767190 polypeptide=Potri.006G025200.1.p locus=Potri.006G025200 ID=Potri.006G025200.1.v4.1 annot-version=v4.1
MATILKFLPISSSLSILPSSYVLSSIHSKSSINFSSLSKRAHHPLVSSIFKQDTTRKYSTSFRISYRYYSVEDDGEENCSFEEAAALFNKREYYKCHDVL
EALWIKAEEPTRTLFHGILQCAVGFHHLFNQNHKGAMMELGEGLCKLKRMDFESGPFHQFEQEISAALDFIYLTQIELAACGDDLCLAMYQSERSYQLLG
AYAAGQHLYRLQNNPNDGTYIVFRPQISSYSGEPQKVKLPTLNAADEHLIAYEFK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G41120 unknown protein Potri.006G025200
[exp]
0 1
AT5G39210 CRR7 chlororespiratory reduction 7 ... Potri.004G120300
[exp]
1.41 0.9827
AT2G20920 Protein of unknown function (D... Potri.009G137600
[exp]
2.00 0.9819
AT3G17170 RFC3 REGULATOR OF FATTY-ACID COMPOS... Potri.008G101900
[exp]
2.82 0.9767 Pt-RFC3.1
AT4G19100 PAM68 photosynthesis affected mutant... Potri.001G132001
[exp]
7.93 0.9777
AT2G01110 TATC, PGA2, APG... unfertilized embryo sac 3, TWI... Potri.010G117200
[exp]
8.36 0.9727 APG2.1
AT3G02450 cell division protein ftsH, pu... Potri.004G106500
[exp]
8.36 0.9701
AT3G47650 DnaJ/Hsp40 cysteine-rich domai... Potri.018G028500
[exp]
9.00 0.9616
AT3G10350 P-loop containing nucleoside t... Potri.010G225100
[exp]
9.48 0.9664
AT3G29185 Domain of unknown function (DU... Potri.004G120900
[exp]
10.09 0.9746
AT2G04530 CPZ, TRZ2 TRNASE Z 2, Metallo-hydrolase/... Potri.014G160600
[exp]
10.72 0.9759

Potri.006G025200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.