Plant FIBer expression Database

Potri.006G025300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67440 584 / 0 EMB1688 embryo defective 1688, Minichromosome maintenance (MCM2/3/5) family protein (.1)
AT1G67460 269 / 5e-87 Minichromosome maintenance (MCM2/3/5) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G023500
[exp]
787 / 0 AT1G67440 588 / 0.0 embryo defective 1688, Minichromosome maintenance (MCM2/3/5) family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015794
[exp]
626 / 0 AT1G67440 596 / 0.0 embryo defective 1688, Minichromosome maintenance (MCM2/3/5) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF01926 MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence
>Potri.006G025300.1 pacid=42767595 polypeptide=Potri.006G025300.1.p locus=Potri.006G025300 ID=Potri.006G025300.1.v4.1 annot-version=v4.1
ATGCAAATCCCTTCTTCACTATCCCTCTTCCGCCATCGCACTCCCACCTTCTTCCGCCACCACCCTCTCCTTATCACCGCATCCAGACACCACCAAAACC
AACCCAATGTCTCCCGCAAACAACCACCAAGCAAAAACCTCCTCAAAGCCAAAAAAAACCTAACTTCCAAAAAAGACTTCTCCAATCTCTCTCCGATCCT
CTCCCCTGACCACACCCCTACCAACCTCTCCGATTCTCAAGCCATCGGCACCGTCGCCGCTTCCCAAGCGAACTTCATGCGCGTGATTGTCACCGCCGAA
CCTGAGAAGATAGAAGATTCTAGTAGTAGTAGTAGTAAAGTTGGAACTGAATTGCTATGCGTGGTTCGGGCGGTGTTGAAGAAGATAAAACGGAGAGTCT
TGGTTGGTGATAAGGTGGTGGTTGGGTCAATTGATTGGGTAGATAGGAGAGGAATGATTGAGAATGTTTTTCAACGGAGTTCGGATATTTTAGACCCGCC
GGTAGCGAATGTGGATCGGTTGTTGGTTCTTTTTTCGGTTGAGCAACCACAGTTGGAATCATTTGTGTTGACTAGGTTTTTGATTGAGGCCGAATCTACT
GGGATTCCGATTACTCTCGCGTTGAATAAAGCAGAACTTGTTGATCAACAGGTGTTGAGTGATTGGGATACTAGATTGAGAAGTTGGGGTTATGAGCCTC
TCTTTTGTAGTGTTGATTCGAAAATGGGGCTTGATAGTTTGGCTTCTGTTTTGAGAGATCAAACGACAGTGATTGTGGGTCCAAGTGGAGTTGGGAAATC
TAGCTTGATTAATGCTTTGAGGAATAAACCCAATTCCCAAGTTGAAGTAGATAATTGGTTTGACCCTATAATGGGTAGCAAGTGGTTTGAAGATCAGCGC
GTCGGTAAAGTTTCAACGAGAAGTGGTAGAGGGAAGCACACTACACGTAACGTCTCTTTGCTTCCACTTGGTGGAGGTGGTTATCTCGCTGATACTCCTG
GGTTTAGCCAACCTAGTTTGTTGAAAGTAACAAAGCAATCTCTTGCCCAGTATTTTCCGGAGATAAGGAAAATGCTTGGTGACAATGAACAGGCTAAATG
TGCATTCAATGATTGCTTGCATGTTGGCGAACCTGGGTGCATAGTAAAAGGGGATTGGGAAAGGTATCCCTTGTATTTCCAGCTTCTTGATGAGATCAGA
ATCAGGGAAGAATTTCAGTTAAGGACATTTGGAACCAAGAGGGAAGATGACGTAAGGTACAAGGTTGGAGACATGGGTGTCAAGCAAGCAGAGCCACGTT
TGGAGCCCAAGAAGCATAGAAGACAGTCTCGCAAAAGGATTAACCAATCAATACTAGATGAGTTGAATGAACTTGATGATGACGAAGATTTGTTGGATGA
TGAAAACGATCCTATCTTGAGGGCACTCAAGAATGAAAATCTTTAG
AA sequence
>Potri.006G025300.1 pacid=42767595 polypeptide=Potri.006G025300.1.p locus=Potri.006G025300 ID=Potri.006G025300.1.v4.1 annot-version=v4.1
MQIPSSLSLFRHRTPTFFRHHPLLITASRHHQNQPNVSRKQPPSKNLLKAKKNLTSKKDFSNLSPILSPDHTPTNLSDSQAIGTVAASQANFMRVIVTAE
PEKIEDSSSSSSKVGTELLCVVRAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSSDILDPPVANVDRLLVLFSVEQPQLESFVLTRFLIEAEST
GIPITLALNKAELVDQQVLSDWDTRLRSWGYEPLFCSVDSKMGLDSLASVLRDQTTVIVGPSGVGKSSLINALRNKPNSQVEVDNWFDPIMGSKWFEDQR
VGKVSTRSGRGKHTTRNVSLLPLGGGGYLADTPGFSQPSLLKVTKQSLAQYFPEIRKMLGDNEQAKCAFNDCLHVGEPGCIVKGDWERYPLYFQLLDEIR
IREEFQLRTFGTKREDDVRYKVGDMGVKQAEPRLEPKKHRRQSRKRINQSILDELNELDDDEDLLDDENDPILRALKNENL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G67440 EMB1688 embryo defective 1688, Minichr... Potri.006G025300
[exp]
0 1
AT2G04530 CPZ, TRZ2 TRNASE Z 2, Metallo-hydrolase/... Potri.014G160600
[exp]
8.18 0.9658
AT2G43950 OEP37, ATOEP37 ARABIDOPSIS CHLOROPLAST OUTER ... Potri.017G007300
[exp]
10.67 0.9617
AT4G02510 TOC86, TOC160, ... TRANSLOCON AT THE OUTER ENVELO... Potri.008G224900
[exp]
12.12 0.9584
AT4G18740 Rho termination factor (.1.2.3... Potri.011G069300
[exp]
18.70 0.9453
AT1G32220 NAD(P)-binding Rossmann-fold s... Potri.001G136900
[exp]
20.59 0.9582
AT1G27385 unknown protein Potri.001G056500
[exp]
23.23 0.9506
AT3G55400 OVA1 OVULE ABORTION 1, methionyl-tR... Potri.010G207300
[exp]
24.73 0.9515
AT4G33090 ATAPM1, APM1 aminopeptidase M1 (.1) Potri.017G039200
[exp]
25.09 0.9422
AT4G29060 EMB2726 embryo defective 2726, elongat... Potri.018G083900
[exp]
28.49 0.9511
AT1G22380 ATUGT85A3 UDP-glucosyl transferase 85A3 ... Potri.016G105400
[exp]
32.15 0.9340

Potri.006G025300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.