Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56860 353 / 2e-117 UBA2A UBP1-associated protein 2A (.1.2.3.4.5) AT2G41060 340 / 6e-113 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G15010 187 / 2e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G22090 145 / 2e-39 UBA1A RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G19380 131 / 9e-33 RNA recognition motif (RRM)-containing protein (.1) AT2G22100 124 / 4e-31 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G53680 81 / 7e-18 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G76460 82 / 4e-17 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G20880 79 / 3e-16 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G22330 79 / 4e-16 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G023800 [exp] 538 / 0 AT3G56860 348 / 1e-115 UBP1-associated protein 2A (.1.2.3.4.5) Potri.001G220600 [exp] 218 / 2e-65 AT3G56860 232 / 1e-70 UBP1-associated protein 2A (.1.2.3.4.5) Potri.005G081600 [exp] 213 / 2e-64 AT2G41060 213 / 8e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G377400 [exp] 188 / 3e-54 AT3G15010 342 / 2e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G055400 [exp] 170 / 3e-48 AT3G15010 303 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G065200 [exp] 168 / 1e-47 AT3G15010 295 / 1e-97 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G048100 [exp] 154 / 2e-42 AT3G15010 181 / 1e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G190900 [exp] 153 / 3e-42 AT3G15010 179 / 6e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.012G109100 [exp] 95 / 8e-23 AT3G56860 45 / 5e-06 UBP1-associated protein 2A (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043016 [exp] 390 / 8e-132 AT3G56860 463 / 1e-160 UBP1-associated protein 2A (.1.2.3.4.5) Lus10032516 [exp] 370 / 4e-125 AT3G56860 405 / 6e-139 UBP1-associated protein 2A (.1.2.3.4.5) Lus10025418 [exp] 173 / 4e-49 AT3G15010 336 / 8e-113 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10015290 [exp] 168 / 4e-47 AT3G15010 335 / 2e-112 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10023817 [exp] 149 / 2e-40 AT3G15010 188 / 5e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10021035 [exp] 144 / 6e-37 AT3G15010 182 / 4e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10041423 [exp] 80 / 1e-16 AT3G54770 181 / 3e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10002684 [exp] 78 / 2e-15 AT2G46780 228 / 1e-72 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030202 [exp] 77 / 2e-15 AT2G46780 224 / 2e-71 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10036503 [exp] 76 / 3e-15 AT3G54770 156 / 5e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.006G025600.1 pacid=42770645 polypeptide=Potri.006G025600.1.p locus=Potri.006G025600 ID=Potri.006G025600.1.v4.1 annot-version=v4.1 ATGGCTAGAAAACGAAAGCTCGACTCCAAATCCACCGAAACAGCAGAAGAACCGCCGAAGAAACAACAGCAACAAGAAGAACCACCAAAGGAAGAACCTC AAGAAGAAGAAGTAGAAGTAGAAGAGGAGGAAGAAGAAGAATATGAAGAAGTGGAAGAGGAGGAAGAAGATAATGAAGATGATCCAGATGGAGAAACCAA TCAAAACGCTCAGATCTCAGCTGTTGAGAATCTAAACGACGACGATGACGAAGACGAGGAGCCGATTGAGAAACTTCTTGAACCGTTTGGAAAAGACCAG TTGATTAATTTACTTCGTGAAGCAGCGGATGGTCACCGAGATGTTGCAGATAAAATCCGGCAAGTAGCTGACCAAGATCCGGTGCACCGGAAGATTTTTG TTCATGGGCTTGGTTGGGATACGAATGCTGAGGCTTTGATCAATGCGTTTAAGCCTTATGGTGAGATTGAGGACTGTAAAGCTGTGTGCGATAAGGTTAC GGGGAAATCGAAGGGTTATGGGTTTATTTTGTTTAAGAAAAGGAGTGGGGCGCGGAATGCGTTGAAGGAGCCGCAGAAGAAGATAGGGAATAGGATGGCA GCTTGTCAATTGGCTTCTACTGGTCCGGTTCCACAGTCCAGTGCTGGACCCTCTGGGCCGATCGCTGCTGCTGCGCAAACACAGCAGCCGGTTTCGGAGT ATACGCTGAGGAAGATTTATGTGAGTAATGTGGGAGCAAATTTGGATCCTCAGAAGCTGATGAGTTTCTTTTCGGAGTTTGGAGAGATTGAAGAAGGACC ATTAGGGCTTGATAAAGCGACTGGGAAACCGAAAGGGTTTTGTTTGTTTGTTTATAAGACAGTTGAGAGTGCTAAGAAAGCGTTAGAAGAGCCACATAAG AGTTTTGAAGGGCACATTTTGCATTGTCAGAAAGCTGTTGATGGGCCAAAACATGCGAAATCGCAGAAACCACCACAGCAACATCATAATATGCAAAGCT CGCATTACCAGAGGAATGATGGAGGTGGGTATGTTGCTAGTGGGGGTCGTGGTGGTCATTTAATGGCCCCGGCTGCTGCTGGTGCTGGGATCGGGTTTAA TCAGAGTGCTGCTGCTCCTGCTTTGAACCCTGCACTTGGACAGGCGCTGACCGCATTGCTTGCCACTCAGGGTGCTGGACTGGGAGGGCTCACTAATTTG CTTGGGACTTTGGGGTCTGCCGCGGCTGTGACCCAGGGTGGTGTACCTAGTGCAGCTCATGGAATGCAGGGTGCCTATGGGAACCAGGCGAGCATAAGTC CTGGAGTGATAGGAGCTTATGCGAATCAGGGAGCTATGCAGGGTGGATATCCAAATCAGCAGATGGGACAGGGTGGTTCTGGGAGAGGACAACATGGGCA ATATACCCCTTATATGGGTCACTAG
AA sequence Show only first row Show all	>Potri.006G025600.1 pacid=42770645 polypeptide=Potri.006G025600.1.p locus=Potri.006G025600 ID=Potri.006G025600.1.v4.1 annot-version=v4.1 MARKRKLDSKSTETAEEPPKKQQQQEEPPKEEPQEEEVEVEEEEEEEYEEVEEEEEDNEDDPDGETNQNAQISAVENLNDDDDEDEEPIEKLLEPFGKDQ LINLLREAADGHRDVADKIRQVADQDPVHRKIFVHGLGWDTNAEALINAFKPYGEIEDCKAVCDKVTGKSKGYGFILFKKRSGARNALKEPQKKIGNRMA ACQLASTGPVPQSSAGPSGPIAAAAQTQQPVSEYTLRKIYVSNVGANLDPQKLMSFFSEFGEIEEGPLGLDKATGKPKGFCLFVYKTVESAKKALEEPHK SFEGHILHCQKAVDGPKHAKSQKPPQQHHNMQSSHYQRNDGGGYVASGGRGGHLMAPAAAGAGIGFNQSAAAPALNPALGQALTALLATQGAGLGGLTNL LGTLGSAAAVTQGGVPSAAHGMQGAYGNQASISPGVIGAYANQGAMQGGYPNQQMGQGGSGRGQHGQYTPYMGH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Potri.006G025600 [exp]	0	1
AT2G20330			Transducin/WD40 repeat-like su...		Potri.014G193500 [exp]	4.58	0.8065
AT3G02890			RING/FYVE/PHD zinc finger supe...		Potri.003G091000 [exp]	9.38	0.7812
AT4G31880			unknown protein		Potri.018G020400 [exp]	9.48	0.7767
AT2G02160	C3HZnF		CCCH-type zinc finger family p...		Potri.010G098200 [exp]	12.72	0.7980
AT3G54540		ABCF4, ATGCN4	ATP-binding cassette F4, gener...		Potri.010G254400 [exp]	14.14	0.7073
AT3G04800		ATTIM23-3	translocase inner membrane sub...		Potri.013G039200 [exp]	16.34	0.7957
AT3G19330			Protein of unknown function (D...		Potri.010G240200 [exp]	19.36	0.7908
AT3G02710			ARM repeat superfamily protein...		Potri.004G076600 [exp]	27.05	0.7935
AT1G03910			unknown protein		Potri.006G118700 [exp]	27.16	0.7846
AT5G61960		AML1	MEI2-like protein 1 (.1.2)		Potri.001G067300 [exp]	27.49	0.7355

Compare expression of checked genes

Potri.006G025600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.