Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56850 271 / 7e-91 bZIP DPBF3, AREB3 ABA-responsive element binding protein 3 (.1) AT2G41070 238 / 2e-78 bZIP DPBF4, ATBZIP12, EEL ENHANCED EM LEVEL, Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT3G44460 100 / 3e-24 bZIP DPBF2, ATBZIP67 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G36270 96 / 2e-22 bZIP EEL, GIA1, ABI5 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G19290 93 / 2e-21 bZIP AREB2, ABF4 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) AT1G49720 89 / 4e-20 bZIP ABF1 abscisic acid responsive element-binding factor 1 (.1.2) AT1G45249 79 / 1e-16 bZIP AtABF2, ATAREB1, AREB1, ABF2 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) AT4G34000 71 / 1e-13 bZIP AtABF3, ABF3, DPBF5 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) AT5G42910 68 / 6e-13 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT4G35900 62 / 7e-11 bZIP ATBZIP14, FD-1, FD Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G024000 [exp] 430 / 5e-154 AT3G56850 241 / 4e-79 ABA-responsive element binding protein 3 (.1) Potri.008G010800 [exp] 238 / 7e-78 AT3G56850 246 / 3e-80 ABA-responsive element binding protein 3 (.1) Potri.010G248100 [exp] 228 / 6e-74 AT3G56850 243 / 2e-79 ABA-responsive element binding protein 3 (.1) Potri.010G248300 [exp] 226 / 4e-73 AT3G56850 216 / 9e-69 ABA-responsive element binding protein 3 (.1) Potri.001G220700 [exp] 160 / 4e-48 AT3G56850 152 / 2e-44 ABA-responsive element binding protein 3 (.1) Potri.009G018500 [exp] 141 / 2e-40 AT3G56850 160 / 1e-47 ABA-responsive element binding protein 3 (.1) Potri.002G090800 [exp] 121 / 2e-32 AT3G56850 136 / 9e-38 ABA-responsive element binding protein 3 (.1) Potri.009G164500 [exp] 102 / 5e-25 AT3G44460 160 / 2e-46 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.014G028200 [exp] 95 / 5e-22 AT1G45249 317 / 2e-105 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028889 [exp] 223 / 7e-72 AT3G56850 273 / 7e-91 ABA-responsive element binding protein 3 (.1) Lus10008929 [exp] 184 / 9e-57 AT3G56850 214 / 3e-68 ABA-responsive element binding protein 3 (.1) Lus10008927 [exp] 129 / 1e-37 AT3G56850 139 / 1e-41 ABA-responsive element binding protein 3 (.1) Lus10028888 [exp] 127 / 2e-34 AT3G56850 157 / 1e-45 ABA-responsive element binding protein 3 (.1) Lus10017049 [exp] 114 / 2e-29 AT2G36270 321 / 1e-106 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10008928 [exp] 107 / 1e-28 AT3G56850 137 / 4e-40 ABA-responsive element binding protein 3 (.1) Lus10021369 [exp] 112 / 2e-28 AT2G36270 322 / 2e-107 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10022720 [exp] 107 / 5e-27 AT2G36270 312 / 2e-103 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10009755 [exp] 93 / 2e-21 AT1G45249 283 / 3e-91 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10006489 [exp] 93 / 2e-21 AT1G45249 297 / 1e-97 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF00170 [poplar] [flax] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Potri.006G025800.2 pacid=42769002 polypeptide=Potri.006G025800.2.p locus=Potri.006G025800 ID=Potri.006G025800.2.v4.1 annot-version=v4.1 ATGGGGTCTCAAGGTGGCTCATTTGAAGAAGAAAATCCAGAGTCTCTGATGGGGCAAGGCTCATTGTGCAGCCTGACACTTGATGAGGTTCAGAACCAGT TGGGGAACTTGGGGAAACCATTGGGGAGCATGAATCTTGATGATCTTCTCAAGAGCGTAGACAATGTGGGTGCTTGGTCTGCACCTATGAATCGACAAGG GAGCCTAACATTGTCAAGGGATCTGAGCAAGAAGACTGTTGAGGAGGTATGGAGAGATATACAGCAGCTGGATAAGAAAGATGATGATAATCCAGGGAGG AATGCTCCTTTCGGTGAGATGACTCTTGAGGACTTCTTGGTTAAGGCAGGGGTGGTTACGGAGTCGACTCCGGTACAACAACAGGAAAGTAATCAATGGA TGCAATTCCAGCTTCCTTCAGTGCAGCAGCCAGTGTATCAAAATAACATGATGACAGTTGTGGATGCAGCATATCCTGATTCCCAAATGAACATATCCCC ATCTTCTTTGATGGGGACTTTGTCGGACACGCAGACTCCTGGGCGGAAAAGGGTTGCTCCAGGAGATGTGGTTGAGAAGACCGTTGAAAGGAAGCAGAAG AGGATGATTAAGAACCGGGAATCCGCAGCTCGTTCACGTGCAAGGAGGCAGGCTTATACACACGAGCTGGAGATTAAGGTCTCTCATCTAGAAGAGGAGA ATGAAAGACTTAGAAAACAGGAGAAGGCGGAGAAGGTCTTGCCATGTGCGCCGCCGCCTGAACCTAAGTCTCAGCTACGCAGAACAAGTTCAGCCCCTTT GTGA
AA sequence Show only first row Show all	>Potri.006G025800.2 pacid=42769002 polypeptide=Potri.006G025800.2.p locus=Potri.006G025800 ID=Potri.006G025800.2.v4.1 annot-version=v4.1 MGSQGGSFEEENPESLMGQGSLCSLTLDEVQNQLGNLGKPLGSMNLDDLLKSVDNVGAWSAPMNRQGSLTLSRDLSKKTVEEVWRDIQQLDKKDDDNPGR NAPFGEMTLEDFLVKAGVVTESTPVQQQESNQWMQFQLPSVQQPVYQNNMMTVVDAAYPDSQMNISPSSLMGTLSDTQTPGRKRVAPGDVVEKTVERKQK RMIKNRESAARSRARRQAYTHELEIKVSHLEEENERLRKQEKAEKVLPCAPPPEPKSQLRRTSSAPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Potri.006G025800 [exp]	0	1
AT5G05080		ATUBC22, UBC22	ubiquitin-conjugating enzyme 2...		Potri.006G026900 [exp]	8.88	0.8738
AT5G18520			Lung seven transmembrane recep...		Potri.016G081300 [exp]	20.34	0.8722
AT4G24130			Protein of unknown function, D...		Potri.001G084200 [exp]	20.56	0.8677
AT1G71780			unknown protein		Potri.002G062300 [exp]	22.44	0.8575
AT5G59410			Rab5-interacting family protei...		Potri.009G032100 [exp]	31.87	0.8607
AT3G02350		GAUT9	galacturonosyltransferase 9 (....		Potri.004G111000 [exp]	34.85	0.8536
AT2G45060			Uncharacterised conserved prot...		Potri.002G142900 [exp]	46.13	0.8538
AT3G54880			unknown protein		Potri.010G227800 [exp]	46.13	0.8494
AT4G10810			unknown protein		Potri.001G087200 [exp]	56.85	0.8288
AT5G09900		RPN5A, MSA, EMB...	REGULATORY PARTICLE NON-ATPASE...		Potri.007G076900 [exp]	59.17	0.8473

Compare expression of checked genes

Potri.006G025800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.