Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60360 101 / 7e-28 EDA14, UTP11 U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11, embryo sac development arrest 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G024300 [exp] 130 / 5e-39 AT3G60360 287 / 7e-99 U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11, embryo sac development arrest 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034210 [exp] 104 / 8e-29 AT3G60360 264 / 6e-90 U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11, embryo sac development arrest 14 (.1) Lus10029059 [exp] 104 / 8e-29 AT3G60360 264 / 8e-90 U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11, embryo sac development arrest 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [poplar] [flax] Lysozyme PF03998 [poplar] [flax] Utp11 Utp11 protein
Representative CDS sequence Show only first row Show all	>Potri.006G026002.1 pacid=42767622 polypeptide=Potri.006G026002.1.p locus=Potri.006G026002 ID=Potri.006G026002.1.v4.1 annot-version=v4.1 ATGGGCCACTCACTGTCGCTTAAGCTGACTGCTGAGGGCTCACAAGGAGAGAGCACAACCGCAAACGAGGAAAAAATTGGGCTGCTTGAGAAACATAAAG ACTATGTTGACCGTGCTAAAGCTTTTCACAAAAAAAAGGAAGCTTTAAGGAGGCTTAAAGAGAAAGCAGCATCGAGAAATCCTGATGAGTTTTACTTTGG AATGATTAAGAGCAGAACAGTTGGTGGAGTTCATCGGCCACAGACCGAAGCAAACAAATACTCCCAAGAAGAACTCATGTTGATGAAGACGCAAGATACT GGATATGTCCTTCAAAAAGAAAAAGGGAGGAGGCTAAAGAGATGA
AA sequence Show only first row Show all	>Potri.006G026002.1 pacid=42767622 polypeptide=Potri.006G026002.1.p locus=Potri.006G026002 ID=Potri.006G026002.1.v4.1 annot-version=v4.1 MGHSLSLKLTAEGSQGESTTANEEKIGLLEKHKDYVDRAKAFHKKKEALRRLKEKAASRNPDEFYFGMIKSRTVGGVHRPQTEANKYSQEELMLMKTQDT GYVLQKEKGRRLKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60360		EDA14, UTP11	U3 SMALL NUCLEOLAR RNA-ASSOCIA...		Potri.006G026002 [exp]	0	1
AT3G46210			Ribosomal protein S5 domain 2-...		Potri.006G239100 [exp]	5.19	0.8397
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.002G258832 [exp]	5.91	0.7667
AT5G06100	MYB	ATMYB33	myb domain protein 33 (.1.2.3)		Potri.003G189700 [exp]	6.48	0.8138
					Potri.008G139375 [exp]	9.38	0.8321
					Potri.016G000700 [exp]	11.22	0.7633
AT3G61800			unknown protein		Potri.014G099300 [exp]	18.97	0.8075
AT5G35370			S-locus lectin protein kinase ...		Potri.002G086500 [exp]	19.44	0.8124
AT3G55200		AtSAP130a	Arabidopsis thaliana spliceoso...		Potri.008G048900 [exp]	22.80	0.7642
AT5G45190			Cyclin family protein (.1.2)		Potri.007G067100 [exp]	23.02	0.8198
AT1G21740			Protein of unknown function (D...		Potri.005G070200 [exp]	25.92	0.7826

Compare expression of checked genes

Potri.006G026002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.