Plant FIBer expression Database

Potri.006G026100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G56840 534 / 0 FAD-dependent oxidoreductase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033520
[exp]
569 / 0 AT3G56840 506 / 4e-178 FAD-dependent oxidoreductase family protein (.1)
Lus10020854
[exp]
311 / 5e-105 AT3G56840 277 / 2e-91 FAD-dependent oxidoreductase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF13450 NAD_binding_8 NAD(P)-binding Rossmann-like domain
Representative CDS sequence
>Potri.006G026100.2 pacid=42769717 polypeptide=Potri.006G026100.2.p locus=Potri.006G026100 ID=Potri.006G026100.2.v4.1 annot-version=v4.1
ATGCTGCCGCGGTTGAAGCAAACACTTCAAAGCTTAAAGAGAACAGCAACAATCTCAAAGGCTCAAGCAATCAAGAATTTGAGCACCCAAATCAAGAAAG
AAGATGTCCCAACAGAGAAACTAGACTGTGTGGTTATAGGAGCAGGAGTGGTGGGGATAGCAATAGCTAGAGAGCTTGCTTCCAAAGGCAGAGAGGTTTT
GGTCCTTGACTCTGCCTCCACTTTTGGCACTGGCACCAGTTCTCGCAACAGTGAAGTCATTCATGCTGGCATCTACTACCCTCCTGATTCTCTCAAGGCT
TTATTTTGTGTGAGGGGAAGAGAATTGCTGTACAGATATTGCTACGAACATGGGGTGCCATGTAAACAGATAGGGAAGCTAATAGTTGCAACTGGGCCAT
TGGAGATTTCGAAGTTAAATGAGTTAATGAATCGTGGAACTCAAAATGGGGTTGATAATTTAAAGATGTTGGAGGGTTTTGAAGCCATGAAAATGGAACC
TGAATTGCAATGCAAGAAAGCATTGCTATCACCTGTTTCTGGAATTGTTGATTCTCATTCACTAATGCTATCTTTAGTGGGAGAAGCTGAAAATAATGGA
ACAACTTTCTCTTATAACTCTACAGTCATCAGTGGCCATCTGGAAGGGAATTGCCTGCACCTCTATATTGTTGAAAGCAAAGATCTTGAGAATTGGAATG
GAGACTATCCATTGCATCCAGAGCTTGTACTTGTTCCTAAGCTTGTAGTGAATTCTGCAGGATTGAGTTCCCTGGCCCTTGCAAAGAGATTTCATGGCCT
AGATAATGGTATAATTCCTCCAGGGTTCTTTGCTCGTGGTTGCTACTTCACCTTATCAAGTACAAAGGTTCCTCCTTTTGAACATTTGATATATCCTATA
CCTGAGGATGGTGGCCTTGGGGTGCATGTTACTCTGGATTTGGATGGCCATCTCAAGTTTGGCCCGGATGTTGAATGGATTGATGGCATAGATGATGTAT
CAAGCTTTCTAAATAAGTATGATTATTCCGTAAGTGCCAGTCGTGCAGAGAGATTCTACCCAGAGATAAGAAAGTACTATCCAAATCTAAAGGATGGATC
ACTGCAGCCAGGCTACTCAGGGATTCGACCGAAAATTTCTGGTCCTCGACAGTCTCCTATCGACTTTGTAATACAGGGAGAGGATATCCATGGGGTGCCT
GGTCTTGTTAACCTCTTTGGAATTGAGTCCCCTGGCCTAACTGCAAGTATGGCTATTGCTGAGCATATAGCTTCCAGATTCTTGAAGTGA
AA sequence
>Potri.006G026100.2 pacid=42769717 polypeptide=Potri.006G026100.2.p locus=Potri.006G026100 ID=Potri.006G026100.2.v4.1 annot-version=v4.1
MLPRLKQTLQSLKRTATISKAQAIKNLSTQIKKEDVPTEKLDCVVIGAGVVGIAIARELASKGREVLVLDSASTFGTGTSSRNSEVIHAGIYYPPDSLKA
LFCVRGRELLYRYCYEHGVPCKQIGKLIVATGPLEISKLNELMNRGTQNGVDNLKMLEGFEAMKMEPELQCKKALLSPVSGIVDSHSLMLSLVGEAENNG
TTFSYNSTVISGHLEGNCLHLYIVESKDLENWNGDYPLHPELVLVPKLVVNSAGLSSLALAKRFHGLDNGIIPPGFFARGCYFTLSSTKVPPFEHLIYPI
PEDGGLGVHVTLDLDGHLKFGPDVEWIDGIDDVSSFLNKYDYSVSASRAERFYPEIRKYYPNLKDGSLQPGYSGIRPKISGPRQSPIDFVIQGEDIHGVP
GLVNLFGIESPGLTASMAIAEHIASRFLK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G56840 FAD-dependent oxidoreductase f... Potri.006G026100
[exp]
0 1
AT1G48430 Dihydroxyacetone kinase (.1) Potri.015G032500
[exp]
1.41 0.6316
AT3G25545 unknown protein Potri.008G110700
[exp]
2.44 0.5413
AT5G06310 ATPOT1B, ATPOT1 protection of telomeres 1b, Nu... Potri.012G046400
[exp]
4.47 0.5477
AT2G30580 BMI1A, DRIP2 DREB2A-interacting protein 2 (... Potri.005G054400
[exp]
16.73 0.5563
AT3G08650 ZIP metal ion transporter fami... Potri.016G140500
[exp]
24.24 0.5194
AT5G25360 unknown protein Potri.006G068600
[exp]
27.65 0.5438
AT4G16150 CAMTA calmodulin binding;transcripti... Potri.008G107900
[exp]
32.61 0.5410
AT5G64700 nodulin MtN21 /EamA-like trans... Potri.011G148600
[exp]
40.98 0.5363
AT5G63440 Protein of unknown function (D... Potri.015G094300
[exp]
56.12 0.4789
AT5G26610 D111/G-patch domain-containing... Potri.013G002100
[exp]
56.49 0.5074

Potri.006G026100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.