Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05080 377 / 3e-133 ATUBC22, UBC22 ubiquitin-conjugating enzyme 22 (.1.2) AT2G02760 117 / 1e-32 ATUBC2 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) AT1G14400 116 / 3e-32 ATUBC1, UBC1 UBIQUITIN CONJUGATING ENZYME 1, ubiquitin carrier protein 1 (.1.2) AT4G27960 108 / 1e-29 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT5G41700 108 / 3e-29 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT5G62540 108 / 3e-29 UBC3 ubiquitin-conjugating enzyme 3 (.1) AT1G78870 108 / 4e-29 UBC35 ,UBC13A UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) AT1G64230 107 / 5e-29 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT5G53300 107 / 6e-29 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT1G16890 107 / 9e-29 UBC36 ,UBC13B UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G024800 [exp] 495 / 6e-180 AT5G05080 372 / 1e-131 ubiquitin-conjugating enzyme 22 (.1.2) Potri.013G064400 [exp] 117 / 6e-33 AT2G02760 313 / 1e-111 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.015G064000 [exp] 116 / 3e-32 AT2G02760 284 / 3e-100 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.019G039200 [exp] 115 / 4e-32 AT2G02760 285 / 2e-100 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.011G168200 [exp] 109 / 9e-30 AT1G64230 295 / 1e-104 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.019G131400 [exp] 109 / 1e-29 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.006G110200 [exp] 109 / 1e-29 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.003G136200 [exp] 109 / 1e-29 AT1G64230 304 / 4e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.016G138900 [exp] 108 / 2e-29 AT1G64230 304 / 3e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038982 [exp] 354 / 1e-122 AT5G05080 310 / 1e-105 ubiquitin-conjugating enzyme 22 (.1.2) Lus10027282 [exp] 328 / 1e-112 AT5G05080 284 / 1e-95 ubiquitin-conjugating enzyme 22 (.1.2) Lus10012110 [exp] 297 / 5e-102 AT5G05080 260 / 5e-88 ubiquitin-conjugating enzyme 22 (.1.2) Lus10010433 [exp] 295 / 4e-101 AT5G05080 253 / 6e-85 ubiquitin-conjugating enzyme 22 (.1.2) Lus10036727 [exp] 118 / 5e-33 AT2G02760 310 / 1e-110 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10037203 [exp] 118 / 5e-33 AT2G02760 310 / 1e-110 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10030786 [exp] 116 / 2e-32 AT2G02760 305 / 2e-108 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10013263 [exp] 113 / 5e-31 AT2G02760 304 / 6e-108 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10033611 [exp] 110 / 8e-30 AT1G16890 311 / 5e-111 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10017654 [exp] 110 / 8e-30 AT1G16890 311 / 5e-111 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [poplar] [flax] UBC PF00179 [poplar] [flax] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Potri.006G026900.8 pacid=42768809 polypeptide=Potri.006G026900.8.p locus=Potri.006G026900 ID=Potri.006G026900.8.v4.1 annot-version=v4.1 ATGGCAACAAATGAAAATCTTCCACCCAATGTAATAAAACAACTTGCAAAGGAACTGAAGAATCTTGATGAATCACCACCTGAGGGAATTAAAGTAGGAG TAAACGATGATGATTTTTCGATCATATATGCTGATATTGAAGGCCCAGCTGGGACTCCATATGAAAATGGTGTTTTCCGCATGAAGCTGTTATTATCTCA TGATTTTCCTCACTCTCCTCCCAAAGGTTACTTCCTGACTAGGATTTTTCATCCAAATATTGCTTCTAATGGTGAGATTTGTGTTAATACGCTTAAAAAG GATTGGAATCCAAGTCTTGGACTACGCCATGTTCTCACGGTAGTGAGGTGTTTATTAATCGAACCGTTTCCAGAGTCAGCTTTGAATGAACAGGCTGGCA AGATGCTCCTTGAAAATTATGAAGAGTATGCCAGACATGCCAGGATTTATACTGGAATCCATGCAAAGCCAAAACCTAAGTTCAAGTCTGGAGCCATTTC AGAATCAACTACAGCTCTTAATGTTGATCAGAGCAACACTTCAGTTCTTAATAACGGTGACCAAAAGAATGCAGCTGTTAGTGCCGCCGTTCCATTGCAA TCTCTACTGGCCCCTTGTACGATGGCCAGCAAAGGAGGAAATAGTCAGGATCAGCTAGCTGCTGTAGGTCCAATGCACGAGACAGAAGTTAGTGGATCAG CTGCTGCACCAACAACCAGCACGTTGAAAAAAGATGTTGGGCTTTCAAAAGTTCAGGCAGTGAAGAAGAAAATGGATGCAAGAAAAAAGAGCTTAAAGAG ATTATGA
AA sequence Show only first row Show all	>Potri.006G026900.8 pacid=42768809 polypeptide=Potri.006G026900.8.p locus=Potri.006G026900 ID=Potri.006G026900.8.v4.1 annot-version=v4.1 MATNENLPPNVIKQLAKELKNLDESPPEGIKVGVNDDDFSIIYADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTRIFHPNIASNGEICVNTLKK DWNPSLGLRHVLTVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKPKPKFKSGAISESTTALNVDQSNTSVLNNGDQKNAAVSAAVPLQ SLLAPCTMASKGGNSQDQLAAVGPMHETEVSGSAAAPTTSTLKKDVGLSKVQAVKKKMDARKKSLKRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05080		ATUBC22, UBC22	ubiquitin-conjugating enzyme 2...		Potri.006G026900 [exp]	0	1
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Potri.008G097000 [exp]	1.00	0.9451
AT1G17370		UBP1B	oligouridylate binding protein...		Potri.018G002300 [exp]	6.32	0.8865
AT5G59410			Rab5-interacting family protei...		Potri.009G032100 [exp]	7.93	0.9145
AT1G22520			Domain of unknown function (DU...		Potri.019G079101 [exp]	8.12	0.9072
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Potri.006G025800 [exp]	8.88	0.8738
AT2G03510			SPFH/Band 7/PHB domain-contain...		Potri.010G158700 [exp]	9.89	0.8817
AT1G49140			Complex I subunit NDUFS6 (.1)		Potri.012G056900 [exp]	10.48	0.9080
AT5G15320			unknown protein		Potri.002G024900 [exp]	10.58	0.9196
AT5G53650			unknown protein		Potri.015G006500 [exp]	12.40	0.9016
AT5G50460			secE/sec61-gamma protein trans...		Potri.001G329400 [exp]	13.26	0.9083

Compare expression of checked genes

Potri.006G026900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.