Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24380 210 / 7e-68 unknown protein AT5G65400 184 / 2e-57 alpha/beta-Hydrolases superfamily protein (.1) AT1G09280 68 / 1e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G102500 [exp] 217 / 9e-71 AT4G24380 334 / 1e-117 unknown protein Potri.005G011300 [exp] 59 / 1e-09 AT1G09280 773 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008722 [exp] 204 / 1e-65 AT4G24380 320 / 7e-112 unknown protein Lus10020946 [exp] 201 / 3e-64 AT4G24380 327 / 1e-114 unknown protein Lus10000004 [exp] 83 / 4e-20 AT4G24380 123 / 2e-37 unknown protein Lus10008045 [exp] 53 / 1e-07 AT1G09280 748 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF03959 [poplar] [flax] FSH1 Serine hydrolase (FSH1)
Representative CDS sequence Show only first row Show all	>Potri.006G027000.1 pacid=42769782 polypeptide=Potri.006G027000.1.p locus=Potri.006G027000 ID=Potri.006G027000.1.v4.1 annot-version=v4.1 ATGGCAAAATCCGAAGATGAAAAGAAGATGAAGATACTATGTCTCCATGGATTTAGGACCAGTGGAAATTTTCTTCAAAAGCAAATTAGCAAGTGGGATC CTTCCATTTTTTCTCAGTTTGACTTGGATTTTCCAGACGGAGTATTTCCAGCTCGAGGCAAATCTGAAATTGAAGGCATTTTCCCACCACCATACTTTGA GTGGTTCCAGTTCGACAAGGACTTTACTGAGTATACAAACCTTGAAGAATGCATCTCTTATTTGTGTGAATACATCACAACTAGAGGTCCTTTTGATGGT TTTCTCGGCTTCTCTCAGGGTGCCACACTCTCAGCCCTGCTACTTGGCTATCAAGCTCAGGGAAAAGTATTGAAGGATCATCCACCCTTTAAACTGTTTG TGTCGGTATCAGGGTCCAAATTCAGAGATCCAAGCATATGTGATGTTGCCTATAAAGACACCATCAAGGTAAAGTCAGTCCACTTTATAGGAGCCAAAGA TTGGTTGAAAGAACCTTCAGAGGACCTCGCCACTGCCTTTGACAGCCCTCTCATCATAAGACATCCACAGGGCCATACTGTTCCTAGACTTGATGAGGCA GCCACGGAGCAGCTACGTGCTTGGGCCACAGAAATCCTCAGTTACAATAACAAAATTCTAAATGGTGAAAATCATGAACTGGAGAATGGAGAAACTAAAG TGGACGATGAAGAAAAAAAGCCAGAAGAGGTCTCTAACAAGATCGATACTACTCAAGTTCAGCAGGATGGAATTGGCATTGAACTAAAGAGAGAAGTAGA AGTTGTGAAAGCCTAA
AA sequence Show only first row Show all	>Potri.006G027000.1 pacid=42769782 polypeptide=Potri.006G027000.1.p locus=Potri.006G027000 ID=Potri.006G027000.1.v4.1 annot-version=v4.1 MAKSEDEKKMKILCLHGFRTSGNFLQKQISKWDPSIFSQFDLDFPDGVFPARGKSEIEGIFPPPYFEWFQFDKDFTEYTNLEECISYLCEYITTRGPFDG FLGFSQGATLSALLLGYQAQGKVLKDHPPFKLFVSVSGSKFRDPSICDVAYKDTIKVKSVHFIGAKDWLKEPSEDLATAFDSPLIIRHPQGHTVPRLDEA ATEQLRAWATEILSYNNKILNGENHELENGETKVDDEEKKPEEVSNKIDTTQVQQDGIGIELKREVEVVKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24380			unknown protein		Potri.006G027000 [exp]	0	1
AT3G03480		CHAT	acetyl CoA:(Z)-3-hexen-1-ol ac...		Potri.001G447900 [exp]	3.46	0.9447
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Potri.002G184500 [exp]	10.24	0.9542
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G447700 [exp]	12.08	0.9494
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.006G074700 [exp]	14.79	0.8422
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Potri.018G033200 [exp]	23.49	0.9423
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G447766 [exp]	25.49	0.9355
AT1G08470		SSL3	strictosidine synthase-like 3 ...		Potri.001G214500 [exp]	29.44	0.8006
AT3G25830		ATTPS-CIN	"terpene synthase-like sequenc...		Potri.019G023008 [exp]	30.51	0.9303
AT3G25830		ATTPS-CIN	"terpene synthase-like sequenc...		Potri.019G023006 [exp]	31.46	0.9336
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Potri.019G023014 [exp]	37.20	0.9301

Compare expression of checked genes

Potri.006G027000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.