Plant FIBer expression Database

Pt-POK.1 (Potri.006G027100) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-POK.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G71270 1189 / 0 ATVPS52, TTD8, POK T-DNA TRANSMISSION DEFECT 8, POKY POLLEN TUBE, ARABIDOPSIS THALIANA VPS52 HOMOLOG, Vps52 / Sac2 family (.1)
AT1G71300 1110 / 0 Vps52 / Sac2 family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016549
[exp]
1204 / 0 AT1G71270 1206 / 0.0 T-DNA TRANSMISSION DEFECT 8, POKY POLLEN TUBE, ARABIDOPSIS THALIANA VPS52 HOMOLOG, Vps52 / Sac2 family (.1)
Lus10040815
[exp]
1201 / 0 AT1G71270 1206 / 0.0 T-DNA TRANSMISSION DEFECT 8, POKY POLLEN TUBE, ARABIDOPSIS THALIANA VPS52 HOMOLOG, Vps52 / Sac2 family (.1)
Lus10008551
[exp]
69 / 2e-13 AT5G58100 154 / 8e-44 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0295 Vps51 PF04129 Vps52 Vps52 / Sac2 family
Representative CDS sequence
>Potri.006G027100.2 pacid=42769945 polypeptide=Potri.006G027100.2.p locus=Potri.006G027100 ID=Potri.006G027100.2.v4.1 annot-version=v4.1
ATGGCGACTACAACTGAGGCGCAATCAAATAATGAAATCACAAAAAGTGTGTTTGATTTAGGAGCTTTTGTTGGTGATTTAGGCTCCATTGAAGATGATG
CCGCTAGTGATGATATATCATTAGAAGGACTTGAGCAGGAACTAGAAGAATGCAGAAATGATGATGTAGTTACGAATATATTGTCGAAAGGGACGAAATT
GAGAGATCACACGAAAGGGGTTGAGAATAATTTACGGCAAGTTGAGTTGGATTCGATTCAGGATTATATAAAAGAAAGTGATAATTTAGTGTCTCTTCAT
GAGCAAATTCGCGATTGTGATATCATCTTGTCGCAGATGGAAACTCTACTTAGTGGTTTCCAGGGTGAGATTGGTTCTATAAGTTCGGACATTAAGATTC
TCCAGGAGAAGTCGATGGATATGGGTCTGAAGCTGAAGAATCGCAAGGCAGCTGAATCAAAACTGGCAAAATTTGTTGAAGACATTATAGTCCCTCCCAG
AATGGTAGACATAATTGTTGATGGAGAGGTTAACGAGGAGTATTTTAGAACTCTCGAAATACTTAGTAAGAAGCTGAAGTTTGTTGAAGCAGATCAATTG
ATTAAAGGTTCCAAAGCTCTAAAAGATGTTCAGCCTGAGCTTGAAAAGCTCAGGCAGAAAGCAGTTACAAAGGTGTTTGACTTCATTGTTCAGAAACTTT
ATGCCTTGAGAAAACCCAAAACAAATATTCAGATCCTTCAACAGAGTGTTCTTTTAAAAAACAAGTATGTCATTTCTTTCCTCAAGGAACATGCCAAGGA
GGTATATATTGAGGTTCGTGCAGCATACGTCGATACGATGAACAAGGTACTTAGTGCACATTTCCGTGCTTACATTCAAGCATTGGAGAAATTGCAGTTA
GATATAGCAACATCTAGTGATTTGATTGGTGTTGAGACCACAAGAAGCACTGGTCTTTTCTCAACTGCAAGAGGACCGCTAAAGAATAAATCAGCTGTAT
TTGCTCTAGGGGAGAGGATCAACATTTTGAAGGACATGGATCAACCAGCATTGATTCCTCATATAGCTGAAGCCGGTTCCCAAAAGTATCCTTATGAGGT
TCTTTTCAGGAGCTTGCACAAGCTGCTAATGGATACTGCTACTTCTGAGTATCTTTTCTGTGATGATTTCTTCGGGGAAGAATCCATTTTTTATGAAATT
TTTGCAGGCCCATTTGCTGTTGTTGATGAACACTTCAATTCAATACTACCTAATTGCTATGACGCCATAGGCCTGATGCTAATGATTCGCATAATACATC
AGCACCAGCTCATTATGTCTCGGCGGCGGATTCCATGCCTGGATTCATATTTGGACAAGGTCAACATTGCTTTATGGCCTCGTTTTAAGATGGTATTTGA
CTTGCACCTTAGCAGCCTCCGTAATGCAAATGTAAAGACATTGTGGGAGGATGACGTCCATCCTCATTATGTTATGAGGCGTTATGCTGAATTTACAGCT
TCTCTTATTCACCTTAATGTTGAATATGGAGATGGACAGCTTGAATTGAATATGGAGAGGCTGAGAATGGCCATTGATGACTTGCTCATGAAGCTTGCTA
AAACATTCCCAAAACCAAAACCACAAATTGTGTTCCTTATAAACAACTATGATATGACGATTGCTGTTTTGAAGGAAGCTGGCTCAGAAGGTGGGAAAAT
TCAATTGCACTTCGAGGAACTGCTGAAGAGCAACACATCGATGTTTGTGGAAGAGCTGCTACTAGAGCATTTTAGTGACCTAATCAAGTTCGTGAAATCC
CGAGCCTCGGAGGAACCGGGTTCGGGCACCGAGAAGCCCATAACTGTTGCTGAAGTCGAGACAATTGTGAAGGATTTTGCAAGCAGATGGAAGGCTGCAA
TAGAGCTGATGCACAAAGATGTTATCACCTCTTTCAGCAACTTCTTATGTGGCATGGAGATATTGAGAGCTGCATTGACACAGCTCCTGCTTTATTATAC
TAGGCTATCAGATACAATAAAGAAGATCGTCGGCGGGTCTGCGCTGAACAAAGATCTTGTGTCTATATCGTCAATCATGTACGAAATCAGGAAATATTCA
AGGACTTTCTAG
AA sequence
>Potri.006G027100.2 pacid=42769945 polypeptide=Potri.006G027100.2.p locus=Potri.006G027100 ID=Potri.006G027100.2.v4.1 annot-version=v4.1
MATTTEAQSNNEITKSVFDLGAFVGDLGSIEDDAASDDISLEGLEQELEECRNDDVVTNILSKGTKLRDHTKGVENNLRQVELDSIQDYIKESDNLVSLH
EQIRDCDIILSQMETLLSGFQGEIGSISSDIKILQEKSMDMGLKLKNRKAAESKLAKFVEDIIVPPRMVDIIVDGEVNEEYFRTLEILSKKLKFVEADQL
IKGSKALKDVQPELEKLRQKAVTKVFDFIVQKLYALRKPKTNIQILQQSVLLKNKYVISFLKEHAKEVYIEVRAAYVDTMNKVLSAHFRAYIQALEKLQL
DIATSSDLIGVETTRSTGLFSTARGPLKNKSAVFALGERINILKDMDQPALIPHIAEAGSQKYPYEVLFRSLHKLLMDTATSEYLFCDDFFGEESIFYEI
FAGPFAVVDEHFNSILPNCYDAIGLMLMIRIIHQHQLIMSRRRIPCLDSYLDKVNIALWPRFKMVFDLHLSSLRNANVKTLWEDDVHPHYVMRRYAEFTA
SLIHLNVEYGDGQLELNMERLRMAIDDLLMKLAKTFPKPKPQIVFLINNYDMTIAVLKEAGSEGGKIQLHFEELLKSNTSMFVEELLLEHFSDLIKFVKS
RASEEPGSGTEKPITVAEVETIVKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDTIKKIVGGSALNKDLVSISSIMYEIRKYS
RTF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G71270 ATVPS52, TTD8, ... T-DNA TRANSMISSION DEFECT 8, P... Potri.006G027100
[exp]
0 1 Pt-POK.1
AT3G05420 ACBP4 acyl-CoA binding protein 4 (.1... Potri.013G018800
[exp]
2.64 0.9631
AT1G52360 Coatomer, beta' subunit (.1.2) Potri.001G179200
[exp]
3.00 0.9502
AT3G27325 hydrolases, acting on ester bo... Potri.001G338000
[exp]
3.31 0.9428
AT1G52360 Coatomer, beta' subunit (.1.2) Potri.003G056300
[exp]
3.87 0.9489
AT1G60780 HAP13 HAPLESS 13, Clathrin adaptor c... Potri.010G044700
[exp]
4.00 0.9608
AT1G60070 Adaptor protein complex AP-1, ... Potri.016G104700
[exp]
4.24 0.9484
AT2G21410 VHA-A2 vacuolar proton ATPase A2 (.1) Potri.002G028600
[exp]
5.65 0.9472
AT4G24840 unknown protein Potri.012G096100
[exp]
7.41 0.9199
AT1G62020 Coatomer, alpha subunit (.1) Potri.015G069700
[exp]
8.30 0.9328
AT2G21520 Sec14p-like phosphatidylinosit... Potri.004G157700
[exp]
9.89 0.9478

Potri.006G027100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.