Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SIP2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56950 265 / 8e-90 SIP2;1, SIP2 small and basic intrinsic protein 2;1 (.1.2) AT3G04090 87 / 2e-20 SIP1A, SIP1;1 small and basic intrinsic protein 1A (.1) AT5G18290 87 / 2e-20 SIP1B, SIP1;2 SMALL AND BASIC INTRINSIC PROTEIN 1B, Aquaporin-like superfamily protein (.1.2) AT5G47450 42 / 0.0001 ATTIP2;3, DELTA-TIP3 DELTA-TONOPLAST INTRINSIC PROTEIN 3, ARABIDOPSIS THALIANA TONOPLAST INTRINSIC PROTEIN 2;3, tonoplast intrinsic protein 2;3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G024900 [exp] 393 / 2e-140 AT3G56950 303 / 1e-104 small and basic intrinsic protein 2;1 (.1.2) Potri.013G053400 [exp] 109 / 6e-29 AT3G04090 224 / 6e-74 small and basic intrinsic protein 1A (.1) Potri.014G154400 [exp] 98 / 2e-24 AT5G18290 183 / 2e-57 SMALL AND BASIC INTRINSIC PROTEIN 1B, Aquaporin-like superfamily protein (.1.2) Potri.002G227500 [exp] 97 / 4e-24 AT5G18290 165 / 2e-50 SMALL AND BASIC INTRINSIC PROTEIN 1B, Aquaporin-like superfamily protein (.1.2) Potri.019G030900 [exp] 96 / 6e-24 AT3G04090 236 / 3e-78 small and basic intrinsic protein 1A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035395 [exp] 284 / 5e-92 AT5G05070 463 / 1e-158 DHHC-type zinc finger family protein (.1) Lus10027275 [exp] 258 / 6e-87 AT3G56950 249 / 2e-83 small and basic intrinsic protein 2;1 (.1.2) Lus10038989 [exp] 256 / 3e-86 AT3G56950 248 / 5e-83 small and basic intrinsic protein 2;1 (.1.2) Lus10030997 [exp] 261 / 2e-83 AT3G56930 332 / 1e-107 DHHC-type zinc finger family protein (.1.2) Lus10030046 [exp] 89 / 5e-21 AT3G04090 172 / 2e-53 small and basic intrinsic protein 1A (.1) Lus10035281 [exp] 87 / 2e-20 AT3G04090 176 / 9e-55 small and basic intrinsic protein 1A (.1) Lus10021989 [exp] 56 / 6e-09 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042528 [exp] 0 / 1 AT5G18280 684 / 0.0 apyrase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [poplar] [flax] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Potri.006G027200.1 pacid=42768862 polypeptide=Potri.006G027200.1.p locus=Potri.006G027200 ID=Potri.006G027200.1.v4.1 annot-version=v4.1 ATGGTTTCTAAGACTCGTTTAATTGTGTCAGATTTTATAGTTTCTATTATTTGGGTATGGAATGGTGCTTTGATAAAGATGTTTGTGTTCAAGGTTTTGC AGATGGGGCATGATTCAAGAGGTGAATTTATGAGGCAGTCTTTGACAGTTGTGAGCCTGTTCTTTTTTGCTTTCTTGGCTAAGGTTACTAAAGGAGCGTC TTTTAATCCTCTTGCTGTTTTGTCTTCTGCTATTTCTGGGGATTTCTCTCATTTTCTCTTCACCATTGGGACTAGAATACCTGCTCAGGTGATTGGATCT ATCACTGCGGTTCGGCTTCTTATCGACACCTTTCCTGAGATAGGACGTGGACCACGCTTGAATGTTGACATCCATAAAGGAGCTCTCACAGAAGGATTGC TGGCATTTGGAGTTGTTACCATCTCTCTTGGGCTTGCAAGAAAGATCCCTGGAAGTTTCTTCATGAAGACTTGGATATCAAGTATTTCAAAGTTATCTCT TCACATACTTGGTTCTGATCTAACGGGCGGTTGTATGAACCCAGCCTCAGTGATGGGATGGGCTTATGCCCGTGGGGATCATATAACCAAGGAGCACATA CTCGTGTACTGGCTTGCCCCAATACAGGGAGCTCTTCTGGCAGCATATACATTTAAGTTGCTCTTTCGGCCACAAAAACAAGACGAGAAAGAAAAGTTGA AGGGCAAAACAGATTGA
AA sequence Show only first row Show all	>Potri.006G027200.1 pacid=42768862 polypeptide=Potri.006G027200.1.p locus=Potri.006G027200 ID=Potri.006G027200.1.v4.1 annot-version=v4.1 MVSKTRLIVSDFIVSIIWVWNGALIKMFVFKVLQMGHDSRGEFMRQSLTVVSLFFFAFLAKVTKGASFNPLAVLSSAISGDFSHFLFTIGTRIPAQVIGS ITAVRLLIDTFPEIGRGPRLNVDIHKGALTEGLLAFGVVTISLGLARKIPGSFFMKTWISSISKLSLHILGSDLTGGCMNPASVMGWAYARGDHITKEHI LVYWLAPIQGALLAAYTFKLLFRPQKQDEKEKLKGKTD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56950		SIP2;1, SIP2	small and basic intrinsic prot...		Potri.006G027200 [exp]	0	1	Pt-SIP2.2
AT3G27200			Cupredoxin superfamily protein...		Potri.016G015200 [exp]	9.89	0.7423
AT3G63300		FKD1	FORKED 1 (.1.2)		Potri.005G213800 [exp]	13.26	0.7456
AT3G43720			Bifunctional inhibitor/lipid-t...		Potri.009G158100 [exp]	23.23	0.7359
AT2G27770			Plant protein of unknown funct...		Potri.004G187600 [exp]	23.36	0.7294
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Potri.004G183500 [exp]	27.12	0.7162
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.001G162500 [exp]	28.74	0.7278	PME2.16
AT1G51405			myosin-related (.1)		Potri.001G256700 [exp]	29.41	0.7303
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Potri.003G022800 [exp]	33.19	0.6831	NAC118
AT4G13990			Exostosin family protein (.1)		Potri.001G321000 [exp]	37.22	0.7059
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.001G162600 [exp]	39.38	0.7107

Compare expression of checked genes

Potri.006G027200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.