Plant FIBer expression Database

Pt-AT103.2 (Potri.006G027300) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-AT103.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G56940 700 / 0 CRD1, CHL27, ACSF, AT103 COPPER RESPONSE DEFECT 1, dicarboxylate diiron protein, putative (Crd1) (.1), dicarboxylate diiron protein, putative (Crd1) (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G025000
[exp]
759 / 0 AT3G56940 670 / 0.0 COPPER RESPONSE DEFECT 1, dicarboxylate diiron protein, putative (Crd1) (.1), dicarboxylate diiron protein, putative (Crd1) (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035398
[exp]
716 / 0 AT3G56940 679 / 0.0 COPPER RESPONSE DEFECT 1, dicarboxylate diiron protein, putative (Crd1) (.1), dicarboxylate diiron protein, putative (Crd1) (.2)
Lus10031000
[exp]
714 / 0 AT3G56940 681 / 0.0 COPPER RESPONSE DEFECT 1, dicarboxylate diiron protein, putative (Crd1) (.1), dicarboxylate diiron protein, putative (Crd1) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0044 Ferritin PF02915 Rubrerythrin Rubrerythrin
Representative CDS sequence
>Potri.006G027300.2 pacid=42769771 polypeptide=Potri.006G027300.2.p locus=Potri.006G027300 ID=Potri.006G027300.2.v4.1 annot-version=v4.1
ATGGCTGTAGAGATGGCTTTAGTAAAACCCCTCTCCAAATTTAGCAGCACACCCAAATTTGGAAATCCAAGAAGTTTCTCCTACCCCAAATTCATTACCA
TCAAAATGTCAGCTACTGCAAAGACAACAAGTAGCCCAAAGCCAAGGAAGAAAGGTAACAAAGGTGAAATCAAAGAGACTCTTTTGGCACCGAGGTTCTA
CACCACTGATTTTGATGAAATGGAGACCCTTTTCAATACTGAAATCAACAAGAAATTGAACCAGTCTGAGTTTGAAGCACTTCTGCAAGAATTCAAGACT
GACTACAACCAGACTCACTTTGTGAGGAACAAGGAGTTCAAGGAAGCTGCTGATAAGATGCAAGGGCCTTTGAGACAGATTTTTGTTGAGTTCTTAGAGA
GGTCTTGCACTGCTGAGTTCTCTGGGTTCCTTCTCTACAAAGAGCTTGGAAGGAGACTCAAGAAAACCAATCCAGTGGTAGCAGAGATTTTCTCCCTCAT
GTCCAGGGATGAAGCCAGGCATGCTGGATTTTTGAACAAGGGTTTGTCTGATTTCAATCTGGCATTGGACTTGGGTTTCCTAACAAAAGCTAGGAAGTAC
ACATTTTTCAAGCCAAAGTTCATTTTCTATGCTACATATTTGTCTGAGAAAATTGGTTACTGGAGATACATAACAATTTACAGACATCTCAGGGAAAACC
CTGAGTACCAGTGTTACCCCATTTTCAAGTACTTTGAGAACTGGTGCCAGGATGAGAACAGACATGGTGATTTCTTCTCTGCATTGATGAAGGCTCAGCC
TCAATTCCTCAACGATTGGAAGGCAAAGTTGTGGTCACGTTTCTTCTGCCTATCGGTGTATGTGACAATGTACCTCAACGACTGCCAGCGAACTGCTTTC
TATGAAGGCATTGGACTCAATACCAAAGAATTCGACATGCATGTCATCATTGAGACTAACCGCACCACAGCGAGAATCTTCCCAGCTGTGCTTGATGTAG
AGAACCCAGAGTTCAAGAGGAAGTTGGACAGGATGGTGGAGATTAACCAGAAGTTGCTTGCTGTTGGTGAGAGCGAAGACAATTCCTTGGTCAAGAACTT
CAAGAGGATTCCCCTTGTTGCAGCATTGGTTTCTGAAATCTTGGCTGCATATCTAATGCCACCAATCGAGTCTGGATCTGTTGATTTTGCAGAGTTTGAA
CCAAAACTTGTTTACTAA
AA sequence
>Potri.006G027300.2 pacid=42769771 polypeptide=Potri.006G027300.2.p locus=Potri.006G027300 ID=Potri.006G027300.2.v4.1 annot-version=v4.1
MAVEMALVKPLSKFSSTPKFGNPRSFSYPKFITIKMSATAKTTSSPKPRKKGNKGEIKETLLAPRFYTTDFDEMETLFNTEINKKLNQSEFEALLQEFKT
DYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKY
TFFKPKFIFYATYLSEKIGYWRYITIYRHLRENPEYQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWSRFFCLSVYVTMYLNDCQRTAF
YEGIGLNTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRKLDRMVEINQKLLAVGESEDNSLVKNFKRIPLVAALVSEILAAYLMPPIESGSVDFAEFE
PKLVY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G56940 CRD1, CHL27, AC... COPPER RESPONSE DEFECT 1, dica... Potri.006G027300
[exp]
0 1 Pt-AT103.2
AT5G67150 HXXXD-type acyl-transferase fa... Potri.003G057200
[exp]
1.00 0.9913
AT3G47470 CAB4, LHCA4 light-harvesting chlorophyll-p... Potri.015G062200
[exp]
2.44 0.9883 CAB4.1
AT3G54890 LHCA1 photosystem I light harvesting... Potri.010G221100
[exp]
3.46 0.9861 1
AT3G59400 GUN4 GENOMES UNCOUPLED 4, enzyme bi... Potri.007G128200
[exp]
3.46 0.9768 GUN4.2
AT2G28690 Protein of unknown function (D... Potri.008G010100
[exp]
3.46 0.9621
AT3G56940 CRD1, CHL27, AC... COPPER RESPONSE DEFECT 1, dica... Potri.016G025000
[exp]
5.00 0.9766 AT103.1
AT3G08940 LHCB4.2 light harvesting complex photo... Potri.016G115200
[exp]
5.91 0.9758 Pt-LHCB4.2
AT1G10657 Plant protein 1589 of unknown ... Potri.010G042300
[exp]
7.74 0.9272
AT1G61520 LHCA3*1, LHCA3*... photosystem I light harvesting... Potri.014G172400
[exp]
8.48 0.9758 LHCA3*1.1,Lhca3
AT4G37470 alpha/beta-Hydrolases superfam... Potri.005G145000
[exp]
9.89 0.9586

Potri.006G027300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.