Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05070 456 / 7e-160 DHHC-type zinc finger family protein (.1) AT3G56930 430 / 8e-149 DHHC-type zinc finger family protein (.1.2) AT2G40990 426 / 3e-148 DHHC-type zinc finger family protein (.1) AT3G56920 400 / 4e-139 DHHC-type zinc finger family protein (.1) AT3G26935 345 / 6e-116 DHHC-type zinc finger family protein (.1) AT4G24630 318 / 6e-106 DHHC-type zinc finger family protein (.1) AT3G48760 320 / 2e-105 DHHC-type zinc finger family protein (.1) AT5G41060 315 / 1e-104 DHHC-type zinc finger family protein (.1.2) AT5G50020 310 / 4e-102 DHHC-type zinc finger family protein (.1.2) AT3G51390 87 / 9e-19 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G025200 [exp] 716 / 0 AT5G05070 468 / 1e-164 DHHC-type zinc finger family protein (.1) Potri.016G025100 [exp] 436 / 2e-150 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2) Potri.006G027400 [exp] 422 / 2e-145 AT3G56930 439 / 9e-151 DHHC-type zinc finger family protein (.1.2) Potri.001G325400 [exp] 337 / 7e-113 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1) Potri.015G101900 [exp] 335 / 7e-112 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.017G063800 [exp] 332 / 6e-111 AT3G26935 671 / 0.0 DHHC-type zinc finger family protein (.1) Potri.005G195300 [exp] 330 / 2e-110 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1) Potri.003G160600 [exp] 328 / 2e-109 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.001G070100 [exp] 327 / 6e-109 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035395 [exp] 511 / 7e-178 AT5G05070 463 / 1e-158 DHHC-type zinc finger family protein (.1) Lus10027274 [exp] 501 / 1e-177 AT5G05070 468 / 2e-164 DHHC-type zinc finger family protein (.1) Lus10038990 [exp] 500 / 2e-177 AT5G05070 466 / 1e-163 DHHC-type zinc finger family protein (.1) Lus10012096 [exp] 417 / 4e-144 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10010447 [exp] 386 / 2e-128 AT3G56930 451 / 3e-152 DHHC-type zinc finger family protein (.1.2) Lus10030997 [exp] 378 / 7e-126 AT3G56930 332 / 1e-107 DHHC-type zinc finger family protein (.1.2) Lus10035177 [exp] 347 / 9e-117 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10032009 [exp] 345 / 6e-116 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10016754 [exp] 332 / 2e-110 AT3G26935 473 / 6e-165 DHHC-type zinc finger family protein (.1) Lus10022451 [exp] 330 / 2e-109 AT3G26935 486 / 3e-170 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [poplar] [flax] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Potri.006G027500.2 pacid=42767193 polypeptide=Potri.006G027500.2.p locus=Potri.006G027500 ID=Potri.006G027500.2.v4.1 annot-version=v4.1 ATGGACCCTTCTCCCACAACAAAATCCAAGAGGCTCTATCAACTTTGGAAGGGTAACAATAAATTCCTCTGTGGTGGGAGAGCAGTCTTTGGTCCTGATG CAGGATCTCTATTTTTGACAACATTTTTAATTGGAGGTCCTGCAACAGCATTCTGCATAAAGATGCTGCTGCTGTTAGTCAGAAAAGATGATCCCTGCTA CGACATTCCAGTTCTAGTTGGGGGATTGGTCCTCGCTATTATGGACTTCGTATTTCTCTTCATGACATCAGGTAGAGATCCAGGAATAATCCCTAGGAAC TGTCAGCCACCTGAATCAGATGAATCGGTTGGCATCCCTTCCCAATCTATGGAGTGGGTTAATAACAAAATTACAGACGTGAAATTGCCTCGTACGAAGG ATCTAATTGTTAATGGCCACAGTATTAAAGTGAAGTTCTGCGACACTTGTCTGTTATATCGTCCGCCACGAGCTTCACATTGCTCCATCTGCAACAATTG TATTCAGAAGTTTGATCATCATTGTCCATGGGTGGGTCAGTGCATTGGACGGCGCAACTATCCATATTTCATAGGCTTTATAACCTCATCAACCACTTTG TGCATATATGTGTTTGCATTTTCTTGGTTTAATGTTCTCCGGCAACATGGAACTTTATGGAGTGCTATGTCGAATGACGTTCTCTCTGTTGTTCTCATTG CATACTGCTTCATAGCATTCTGGTTTGTTGGTGGGCTAACGCTTTTCCACGTCTACCTGATTAGCACCAACCAGACCACTTACGAAAATTTCCGGTACCG CTATGATAAGAAGGAAAACCCCTTCAACAGAGGGATCATAAAGAACTTTAAACAAGTATTCTTCTCGAAGATCCCAGTTTCAGCAATCAATTTCCGAGAA TGGGTGACAGAAGATGATGATTCTATAAAGGGTGGTTCGGACATAAATGGAAACTTCGTTGGGAAAGGGAAATTCGACATAGAAATGGGAGGTAAATTTG GCAAGGATGGAGCCATGCATCTCCCTAGTATCTTGCAGAATCTGGATTATGGCAGTCTTGATGATAATTTGAAGAAAAAGGGAGAAGAAAAACCTGCATT TGACCCCTTTTTATTCCCTGCCGATCAAGAACAACCAAATTCACCGCAGATCTCCATCGACAAAAGCAATCCTGTGGGAGATAACAGGAAACAACAGCTT TCATGA
AA sequence Show only first row Show all	>Potri.006G027500.2 pacid=42767193 polypeptide=Potri.006G027500.2.p locus=Potri.006G027500 ID=Potri.006G027500.2.v4.1 annot-version=v4.1 MDPSPTTKSKRLYQLWKGNNKFLCGGRAVFGPDAGSLFLTTFLIGGPATAFCIKMLLLLVRKDDPCYDIPVLVGGLVLAIMDFVFLFMTSGRDPGIIPRN CQPPESDESVGIPSQSMEWVNNKITDVKLPRTKDLIVNGHSIKVKFCDTCLLYRPPRASHCSICNNCIQKFDHHCPWVGQCIGRRNYPYFIGFITSSTTL CIYVFAFSWFNVLRQHGTLWSAMSNDVLSVVLIAYCFIAFWFVGGLTLFHVYLISTNQTTYENFRYRYDKKENPFNRGIIKNFKQVFFSKIPVSAINFRE WVTEDDDSIKGGSDINGNFVGKGKFDIEMGGKFGKDGAMHLPSILQNLDYGSLDDNLKKKGEEKPAFDPFLFPADQEQPNSPQISIDKSNPVGDNRKQQL S

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05070			DHHC-type zinc finger family p...		Potri.006G027500 [exp]	0	1
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Potri.011G166601 [exp]	11.61	0.7600
					Potri.003G039626 [exp]	16.70	0.7069
AT1G22540			Major facilitator superfamily ...		Potri.013G106700 [exp]	20.44	0.7001
					Potri.006G140801 [exp]	21.90	0.7472
					Potri.008G139250 [exp]	24.24	0.7166
					Potri.009G003650 [exp]	35.07	0.7013
AT5G12260			unknown protein		Potri.012G123450 [exp]	35.69	0.6943
					Potri.001G178950 [exp]	37.88	0.6732
					Potri.001G382300 [exp]	43.82	0.6923
AT5G53120		SPMS, SPDS3, AT...	spermidine synthase 3 (.1.2.3....		Potri.015G018900 [exp]	45.43	0.6987

Compare expression of checked genes

Potri.006G027500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.