Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04940 583 / 0 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT1G73100 571 / 0 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT1G17770 381 / 4e-123 SDG17, SUVH7 SET DOMAIN PROTEIN 17, SU(VAR)3-9 homolog 7 (.1) AT2G35160 349 / 1e-109 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT2G24740 348 / 1e-109 SUVH8, SDG21 SU\(VAR\)3-9 HOMOLOG 8, SET domain group 21 (.1) AT2G22740 319 / 3e-98 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT4G13460 312 / 6e-97 SET22, SDG22, SUVH9 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) AT2G33290 297 / 3e-91 SDG3, ATSUVH2, SUVH2 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) AT5G13960 264 / 3e-79 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT2G05900 141 / 2e-37 SUVH10, SDG11 SU\(VAR\)3-9 HOMOLOG 10, SET domain protein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G025300 [exp] 1090 / 0 AT5G04940 561 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.003G188700 [exp] 625 / 0 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.001G036800 [exp] 617 / 0 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.003G083100 [exp] 362 / 1e-112 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.010G064300 [exp] 326 / 1e-101 AT4G13460 772 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.008G173100 [exp] 323 / 1e-100 AT4G13460 750 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.002G237950 [exp] 288 / 1e-87 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.014G143900 [exp] 266 / 2e-79 AT5G13960 706 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.003G162801 [exp] 245 / 7e-71 AT5G13960 529 / 8e-180 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026137 [exp] 582 / 0 AT1G73100 757 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10008681 [exp] 580 / 0 AT1G73100 738 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10029470 [exp] 580 / 0 AT1G73100 762 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10011011 [exp] 329 / 5e-100 AT2G35160 620 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10040150 [exp] 322 / 3e-99 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10023714 [exp] 316 / 3e-98 AT4G13460 759 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Lus10001011 [exp] 323 / 7e-98 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10041515 [exp] 293 / 2e-89 AT5G13960 792 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10031984 [exp] 287 / 5e-87 AT5G13960 764 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10035115 [exp] 254 / 2e-74 AT5G13960 716 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain CL0178 [poplar] [flax] PUA PF02182 [poplar] [flax] SAD_SRA SAD/SRA domain CL0178 [poplar] [flax] PF05033 [poplar] [flax] Pre-SET Pre-SET motif
Representative CDS sequence Show only first row Show all	>Potri.006G027600.5 pacid=42770075 polypeptide=Potri.006G027600.5.p locus=Potri.006G027600 ID=Potri.006G027600.5.v4.1 annot-version=v4.1 ATGGAAGAATCAGCAGGCGAAGGCCCAATAGATAAGTCCAGGGTTTTGAATGTAAAGCCCTTGCGGACTCTTACTCCAGTATTCTCTTCACCATCAAATT CCAGTTCTTTTTCTCAAGGTTCTGCCCCTTTTGTTTGTGTTCCCCCAGCTGGTCCTTTCCCACCTGGAGTTTCCCCGTTCTTTCCATTTTCTGGTATACC TAATCAATCTTCCGGTGACCACACCCCAATATCATCAGCGGTTCCTATCAATTCGTTTCGGTCACCTGAGCCTCTCAAACGTGCTGCAAATGGAAATGCT GGGTCATCAAGGAGGGTTAATAGAAACAACAGGGGTGTGGAAGAAGATGGGTATAGCGATGACCAAACTCAGAGTTCGCAGAGTAGATATCAGAAGAGGA AAAAAGGCGGCCATGACAAATTTGCTTCTCCTGACGTTGACACTGATGTGATGGTAGAAAATATTTTCCAGTCCTATAACCTTGTGCCATTTGAAGCAGC ACGACTATATGATGGCGATAAAGATTCTGTAGGATATGTACTCCTGGTTTTCAATTTGCTCCGAAGACAAATAGCACAGCTTGAAGATACAAAGGAAGCC ACATCGGGGCAATCAAGGCGCCCTGACTTGAAAACAGGTAATGTTTTGATGACCAAAGGAATTCGGACGAATGCCAAGAAGAGAGTTGGAGCTGTACCTG GTGTTGAAATTGGTGATATTTTCTTTTTTAGAATGGAATTGTGCACAATTGGACTGCATGCTCCAAGTATGGCTGGAATAGATTACATGTCTGTCAGGAT CAGTCAAGATGAAGAACCAATAGCTGTTAGCATTGTTTCATCAGGAGGATATGAAGATGATGTTGACGGTGATGATGGTTTGATTTACACTGGCCAAGGT AAGGAAATGGATCAAAAGCTTGAAAGGGGTAACCTTGCGCTGGAGAAGAGCTTGCACCGTGGTAATGACATTAGAGTAATCAGGGGTATAAAGGATGTGG GAAATCCGACTGGAAAGGTATATATGTATGATGGTTTATATAGAATCCAAGAGTCATGGTTAGAGAAAGGAAAGTCTGGTTCCAATGTTTTTAGGTATAA GTTGGGTAGGTTACCTGGCCAGCCTGAGGCATACAAAACGTGGAAAAAAATTCAGCAATGGAAGGATGGTACTATTACTAGGTTCGGGATTATACTGCCT GATCTTACTTCAGGGTGTGAAACTTTACCTGTTTCTCTTGTGAATGATGTTGACAATGAAAAGGGGCCTGCCTATTTCACTTATTCTCCAAACCTCAAGT ATTCAAAACCTGCACCAAGGGATCCTTTTGTTGGCTGTGCTTGCAATGGTGCATGTCTCCCAGGAAACGAGAACTGTGATTGTATTCAGAAAAATGGAGG CTATCTTCCTCACATTGTGAATGGGGTTATTGTGAGCCAAAAATCTGTGATATATGAGTGTGGTCCTTCCTGTCAGTGCCCTCCAACTTGCCGTAATCGT GTGTCTCAGGGTGGTTTGAGAGTTCGTTTGGAGGTGTTTAAGACTAAGGACAAAGGTTGGGGTTTAAGATCCTGGGATCCCATACGAGCTGGAGCTTTTA TATGTGTATATGCAGGAGAAGCTGTTGATGATTCGAAGGCACAAGAGCTTGCAGGTGAAAATGAAGATGATCACATCTTTGATGGTTCCCGCACTTACCA GCCAGTGGAAATTTTGCCTGGTGATTCCAATAATGCTCCAAACCTCCCATTTCCTCTTGTAATAAATGCCAGAAATGCTGGGAATGTAGCTCGTTTTATA AATCACAGTTGCTCTCCAAATCTGTTCTGGCAGCCAGTTTTACGTGGAAATAGCAAGGAGTTTGATCTCCATATTGCATTTTATGCCATCAGACACATTC CTCCTATGACAGAGTTGACATATTGTTATGGGATGGTACCTCCTGAAAAAGCAGATTGTGGGAAGAGAAAATGCTCATGTGGATCACCGAAGTGCAGAGG TTTTTTCTATTGA
AA sequence Show only first row Show all	>Potri.006G027600.5 pacid=42770075 polypeptide=Potri.006G027600.5.p locus=Potri.006G027600 ID=Potri.006G027600.5.v4.1 annot-version=v4.1 MEESAGEGPIDKSRVLNVKPLRTLTPVFSSPSNSSSFSQGSAPFVCVPPAGPFPPGVSPFFPFSGIPNQSSGDHTPISSAVPINSFRSPEPLKRAANGNA GSSRRVNRNNRGVEEDGYSDDQTQSSQSRYQKRKKGGHDKFASPDVDTDVMVENIFQSYNLVPFEAARLYDGDKDSVGYVLLVFNLLRRQIAQLEDTKEA TSGQSRRPDLKTGNVLMTKGIRTNAKKRVGAVPGVEIGDIFFFRMELCTIGLHAPSMAGIDYMSVRISQDEEPIAVSIVSSGGYEDDVDGDDGLIYTGQG KEMDQKLERGNLALEKSLHRGNDIRVIRGIKDVGNPTGKVYMYDGLYRIQESWLEKGKSGSNVFRYKLGRLPGQPEAYKTWKKIQQWKDGTITRFGIILP DLTSGCETLPVSLVNDVDNEKGPAYFTYSPNLKYSKPAPRDPFVGCACNGACLPGNENCDCIQKNGGYLPHIVNGVIVSQKSVIYECGPSCQCPPTCRNR VSQGGLRVRLEVFKTKDKGWGLRSWDPIRAGAFICVYAGEAVDDSKAQELAGENEDDHIFDGSRTYQPVEILPGDSNNAPNLPFPLVINARNAGNVARFI NHSCSPNLFWQPVLRGNSKEFDLHIAFYAIRHIPPMTELTYCYGMVPPEKADCGKRKCSCGSPKCRGFFY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Potri.006G027600 [exp]	0	1
AT2G33170			Leucine-rich repeat receptor-l...		Potri.003G174900 [exp]	3.16	0.8322
AT5G17680			disease resistance protein (TI...		Potri.019G069500 [exp]	3.46	0.8592
AT3G25430			Polynucleotidyl transferase, r...		Potri.014G018500 [exp]	6.92	0.8342
AT5G20270		HHP1	heptahelical transmembrane pro...		Potri.018G124754 [exp]	9.79	0.7774
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.006G258100 [exp]	11.74	0.8204
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.008G178200 [exp]	14.07	0.8443
AT2G30080		ATZIP6, ZIP6	ZIP metal ion transporter fami...		Potri.009G074100 [exp]	14.42	0.7913	ZIP6.2
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Potri.001G060000 [exp]	16.97	0.8028
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Potri.005G246000 [exp]	17.32	0.7786
AT3G26020			Protein phosphatase 2A regulat...		Potri.008G180000 [exp]	18.54	0.8199

Compare expression of checked genes

Potri.006G027600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.