Plant FIBer expression Database

Potri.006G027700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G10740 999 / 0 ATASD1, ARAF1, ARAF, ASD1 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 1, alpha-L-arabinofuranosidase 1 (.1)
AT5G26120 930 / 0 ATASD2, ASD2 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 2, alpha-L-arabinofuranosidase 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G025500
[exp]
1253 / 0 AT3G10740 999 / 0.0 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 1, alpha-L-arabinofuranosidase 1 (.1)
Potri.016G026532
[exp]
39 / 0.0007 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038988
[exp]
955 / 0 AT3G10740 972 / 0.0 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 1, alpha-L-arabinofuranosidase 1 (.1)
Lus10027276
[exp]
906 / 0 AT3G10740 922 / 0.0 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 1, alpha-L-arabinofuranosidase 1 (.1)
Lus10031008
[exp]
774 / 0 AT3G10740 783 / 0.0 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 1, alpha-L-arabinofuranosidase 1 (.1)
Lus10035405
[exp]
187 / 4e-55 AT3G10740 191 / 9e-57 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 1, alpha-L-arabinofuranosidase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0369 GHD PF06964 Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminal domain
Representative CDS sequence
>Potri.006G027700.5 pacid=42770483 polypeptide=Potri.006G027700.5.p locus=Potri.006G027700 ID=Potri.006G027700.5.v4.1 annot-version=v4.1
ATGGGTTATTGGAAGGCCTCCTGCAGTGTTCTTCTGGTCTGCTTCTTTGTTGGTCTTTGTTCCGTGTATCAATGCTCTGCTGCTGAAGTTGATGCATATC
AGACAGCAAAATTGATCGTTAATGCCTCCAGTGGTCGGCCTATTCCTGAAACACTCTTTGGAATTTTCTTCGAGGAGATAAACCATGCCGGAGCTGGTGG
GATATGGGCAGAGCTTGTAAGCAATCGGGGTTTTGAAGCTGGGGGCCAAAATACTCCCTCAAATATTGCTCCCTGGTCTATAATTGGTGATCAGTCATCT
TTAACTGTATCTACTGATCGTTCTTCTTGCTTTGAGCGCAATAAGGTTGCACTCCGAATGCATGTGCTCTGTGACAGCGAGGGCAGTAATATTTGCCCAG
CTGGCGGAGTTGGAATATATAATCCAGGGTTTTGGGGCATGAATATTGAACAAGGGAAGATCTACAAAGTAGTTCTTTATGTTCGTTCTCTTGGATCAAT
CAATGTATCTGTATCATTGACGAGCTCAGATGGGCTGCAGATATTGGCGACTGCTAACATTGTAGATTCTGATGTTTCAAACTGGACAAAGACCGAGGTT
CTATTGGAAGCCAAAGGAACAAATCCTAATTCAAGGCTTCAGTTGACAACATCCAGGAAAGGTGTAATATGGTTTGATCAAGTGTCAGCTATGCCTTTGG
AGACATACAAGGGGCATGGTTTCCAAAAGGAGCTCATTGAAATGCTTGAAGATATAAAACCCCAATTTATCAGATTTCCTGGTGGATGCTTCGTCGAAGG
TGAATGGTTGAGAAATGCATTTCGCTGGAAGGAAAGCATTGGACCCTGGGAGGAGAGACCTGGGCATTTTGGTGATGTTTGGATGTATTGGACTGATGAT
GGACTTGGTTACTTTGAGTTTCTTCAACTATCTGAAGATCTTGGTGCACGGCCTATATGGGTGTTCAACAATGGAATCAGCCATCGGGATGAAGTTGATA
CCACCACTGTCTCACCTTTTGTACAAGAAGCCCTTGATGGTCTTGAGTTTGCTAGAGGCGCTTCTGATTCTAAATGGGGTTCTGTAAGAGCAGCAATGGG
GCATCCAGAGCCGTTTGACTTGAAATATGTTGCTGTTGGGAACGAGGACTGTTGGAAGAAGAATTACCGAGGAAATTATCTCAAGTTCTACGATGCTATA
AAAAGTGCCTATCCCGACATCAAAATAATCTCAAACTGTGATGGGTCTTCTCATTCTTTGGATCATCCTGCTGATTACTATGATTTTCATATTTATACAT
CTGCCAGCCACCTGTTTTCTATGACTCATCAATTTGATCACACATCCCGCTCTGGTCCAAAGGCTTTTGTGAGTGAGTATGCTGTGACTGGAAAAGATGC
TGGCACAGGAAGTCTTTTAGCAGCACTTGCTGAAGCTGGATTCCTCATTGGGCTGGAAAAGAACAGTGATATTGTGGAGATGGCAAGCTACGCACCACTT
TTCGTGAATGACAATGACAGGAGGTGGAATCCAGATGCAATTGTCTTCAACTCCTCAATGCACTATGGAACTCCAAGCTACTGGGTGCTGAAATTCTTCA
GAGAGTCGAGTGGAGCAACTCTGCTTGATGCTAAACTACAAACAAATTCCTCTTCACTTGTTGCATCTGCAATTACCTGGACAAACTCAGTGGATGGTGA
AACTTACCTGAAAATAAAGATTGTGAATTTTGGGAACAGGCACGTGAGTCTCAAAGTTTCAGTTGATGGATTGGGGCTCAACTCACAATTGTCTGGATCA
ACAAAAACTGTGCTCACTTCTTCGAATGTAATGGACGAGAATTCCTTCACGGATCCAAACAAGGTGGTGCCAGACCTCAGTCTGCTTGAGAATGCTGACA
AAGACATGAACATTATAATCGCTCCATATTCTTTGACTTCACTTGATTTATTAACAGAATCAAACAATATCAGGATGCCACAAACCGATTCTTCAGCTAG
ATCATCAATTTAG
AA sequence
>Potri.006G027700.5 pacid=42770483 polypeptide=Potri.006G027700.5.p locus=Potri.006G027700 ID=Potri.006G027700.5.v4.1 annot-version=v4.1
MGYWKASCSVLLVCFFVGLCSVYQCSAAEVDAYQTAKLIVNASSGRPIPETLFGIFFEEINHAGAGGIWAELVSNRGFEAGGQNTPSNIAPWSIIGDQSS
LTVSTDRSSCFERNKVALRMHVLCDSEGSNICPAGGVGIYNPGFWGMNIEQGKIYKVVLYVRSLGSINVSVSLTSSDGLQILATANIVDSDVSNWTKTEV
LLEAKGTNPNSRLQLTTSRKGVIWFDQVSAMPLETYKGHGFQKELIEMLEDIKPQFIRFPGGCFVEGEWLRNAFRWKESIGPWEERPGHFGDVWMYWTDD
GLGYFEFLQLSEDLGARPIWVFNNGISHRDEVDTTTVSPFVQEALDGLEFARGASDSKWGSVRAAMGHPEPFDLKYVAVGNEDCWKKNYRGNYLKFYDAI
KSAYPDIKIISNCDGSSHSLDHPADYYDFHIYTSASHLFSMTHQFDHTSRSGPKAFVSEYAVTGKDAGTGSLLAALAEAGFLIGLEKNSDIVEMASYAPL
FVNDNDRRWNPDAIVFNSSMHYGTPSYWVLKFFRESSGATLLDAKLQTNSSSLVASAITWTNSVDGETYLKIKIVNFGNRHVSLKVSVDGLGLNSQLSGS
TKTVLTSSNVMDENSFTDPNKVVPDLSLLENADKDMNIIIAPYSLTSLDLLTESNNIRMPQTDSSARSSI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G10740 ATASD1, ARAF1, ... ARABIDOPSIS THALIANA ALPHA-L-A... Potri.006G027700
[exp]
0 1
AT3G48530 KING1 SNF1-related protein kinase re... Potri.012G097000
[exp]
1.41 0.8373
AT3G16990 Haem oxygenase-like, multi-hel... Potri.008G106600
[exp]
1.73 0.7843 Pt-PM36.1
AT1G14780 MAC/Perforin domain-containing... Potri.002G234700
[exp]
2.23 0.7684
AT1G15670 Galactose oxidase/kelch repeat... Potri.001G007000
[exp]
4.47 0.7735
AT1G27300 unknown protein Potri.003G170700
[exp]
8.77 0.7425
AT1G14670 Endomembrane protein 70 protei... Potri.012G042300
[exp]
10.00 0.7343
AT1G11840 ATGLX1 glyoxalase I homolog (.1.2.3.4... Potri.004G013200
[exp]
10.19 0.6782 Pt-ATGLX1.1
AT2G27310 F-box family protein (.1) Potri.005G208200
[exp]
10.90 0.7031
AT2G24100 ASG1 ALTERED SEED GERMINATION 1, un... Potri.003G185050
[exp]
11.61 0.7365
AT1G54070 Dormancy/auxin associated fami... Potri.003G070500
[exp]
12.96 0.6995

Potri.006G027700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.