Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58290 193 / 2e-60 RPT3 regulatory particle triple-A ATPase 3 (.1) AT4G29040 55 / 4e-09 RPT2A regulatory particle AAA-ATPase 2A (.1) AT2G20140 55 / 5e-09 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G029100 [exp] 248 / 1e-84 AT5G58290 308 / 2e-105 regulatory particle triple-A ATPase 3 (.1) Potri.006G031000 [exp] 246 / 4e-81 AT5G58290 771 / 0.0 regulatory particle triple-A ATPase 3 (.1) Potri.016G028000 [exp] 234 / 1e-76 AT5G58290 781 / 0.0 regulatory particle triple-A ATPase 3 (.1) Potri.002G252600 [exp] 51 / 1e-07 AT4G29040 838 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.014G194700 [exp] 49 / 4e-07 AT4G29040 829 / 0.0 regulatory particle AAA-ATPase 2A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006854 [exp] 75 / 4e-16 AT5G58290 526 / 0.0 regulatory particle triple-A ATPase 3 (.1) Lus10011901 [exp] 50 / 2e-07 AT2G20140 844 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10022834 [exp] 50 / 3e-07 AT2G20140 735 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10006976 [exp] 48 / 1e-06 AT4G29040 828 / 0.0 regulatory particle AAA-ATPase 2A (.1) Lus10019995 [exp] 47 / 2e-06 AT2G20140 827 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10000030 [exp] 44 / 7e-06 AT4G29040 276 / 5e-93 regulatory particle AAA-ATPase 2A (.1) Lus10001313 [exp] 44 / 2e-05 AT4G29040 673 / 0.0 regulatory particle AAA-ATPase 2A (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G028200.2 pacid=42770120 polypeptide=Potri.006G028200.2.p locus=Potri.006G028200 ID=Potri.006G028200.2.v4.1 annot-version=v4.1 ATGTCGACAATGGTACTTGACCTGAGACCCGCCGCGACAGTGGAGCCAAGATCGGACCTTGTACCCGACCCAACAGCAGTACCCACGGAAGACGACAACC TCTACAGCCGCTTCAAATCTTTGCAAAGGCAGCTAGAATTCATTGACATACAAGAGGAGTATGTCAAGGATGAGCAGAAGAATCTGAAACGAGAGCTACT TCGTGCGCAAGAAGAGGTGAAGCGGATCCAGTCGGTCCCGCTTGTAAGCGGGCAGTTTATGGAGATGGTGGATCAGAATAATGGGATTGTTGGGTCTACT ACGGGTTCGAAGAATTATTATGTGAGGATTTTGAGTACGATTAATTGGGAATTGTTGAAGGCATCGACTTCTATGGCTTTGCATGGGCAATCGAATGCTC TTGTTGATGTTTTGCCACCCAGGCTGATTCTAGTATTTCTCTGCTTAGTCAGAGTGAGAAACCTGATGTTACTTATAATGTATGTGAAAAAGTCTTTTTT GGGGGGTTTTGGATTTGGGGTTTCTAAAATTGGTGATTTTGTGATTTGA
AA sequence Show only first row Show all	>Potri.006G028200.2 pacid=42770120 polypeptide=Potri.006G028200.2.p locus=Potri.006G028200 ID=Potri.006G028200.2.v4.1 annot-version=v4.1 MSTMVLDLRPAATVEPRSDLVPDPTAVPTEDDNLYSRFKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVSGQFMEMVDQNNGIVGST TGSKNYYVRILSTINWELLKASTSMALHGQSNALVDVLPPRLILVFLCLVRVRNLMLLIMYVKKSFLGGFGFGVSKIGDFVI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58290		RPT3	regulatory particle triple-A A...		Potri.006G028200 [exp]	0	1
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Potri.014G143900 [exp]	15.09	0.7022
					Potri.001G296450 [exp]	16.52	0.5368
AT1G56050			GTP-binding protein-related (....		Potri.011G143700 [exp]	20.09	0.6893
AT5G50570	SBP	SPL13, SPL13A	SQUAMOSA PROMOTER-BINDING PROT...		Potri.012G100700 [exp]	23.15	0.6771
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Potri.016G043800 [exp]	35.55	0.6639	EIF3.3
AT5G42655			Disease resistance-responsive ...		Potri.002G131500 [exp]	36.49	0.6769
AT3G11090	AS2	LBD21	LOB domain-containing protein ...		Potri.008G071500 [exp]	46.46	0.6624
					Potri.017G139650 [exp]	50.64	0.6590
AT3G48970			Heavy metal transport/detoxifi...		Potri.015G144300 [exp]	62.27	0.6670
AT1G30580			GTP binding (.1)		Potri.001G465900 [exp]	63.44	0.6513

Compare expression of checked genes

Potri.006G028200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.