Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G029500 [exp] 205 / 3e-69 ND / Potri.006G028101 [exp] 111 / 8e-33 ND / Potri.016G027600 [exp] 62 / 4e-13 AT3G56910 / plastid-specific 50S ribosomal protein 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035720 [exp] 52 / 9e-09 AT3G56910 40 / 2e-04 plastid-specific 50S ribosomal protein 5 (.1) Lus10037307 [exp] 50 / 3e-08 AT3G56910 39 / 6e-04 plastid-specific 50S ribosomal protein 5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G028500.1 pacid=42768869 polypeptide=Potri.006G028500.1.p locus=Potri.006G028500 ID=Potri.006G028500.1.v4.1 annot-version=v4.1 ATGGCTCTTCTTGTCTCTGTACCAATTTCCTCTTCATCTTCTTTATATGGCGTTTCATCAACCAGGGTCACTCTTGGTCTCCCATCTTGCAGGTTACCCA TTGGTGTACTCTCAAAGTCTTTTGATGGAATTTGCTTAAGCACCCCCGTGGGAAAGGGTTTAATGAAAGTTAAGGCGTTGTCTGACAGTAAGGGGACAAG TCCAGATAGTGGGCAACCTGTGTCTGAAAGTGATGATGAAGAGGAGGATGTGGTTCTTGATAAAATTCCTTTGGATTCAAAGCTGCAGCTGAAGCTTGAG CACAAGATGAAGATGAAGTTGGGGAAGAAGATAAGGCTTAGGAGTAAGAAGCTTGATCGGAAGCGAGGGATGAGGAAGAGGGGACAGTGGCCACCATCAA AAGTAAACAAGTTGAAGAATGTCTAA
AA sequence Show only first row Show all	>Potri.006G028500.1 pacid=42768869 polypeptide=Potri.006G028500.1.p locus=Potri.006G028500 ID=Potri.006G028500.1.v4.1 annot-version=v4.1 MALLVSVPISSSSSLYGVSSTRVTLGLPSCRLPIGVLSKSFDGICLSTPVGKGLMKVKALSDSKGTSPDSGQPVSESDDEEEDVVLDKIPLDSKLQLKLE HKMKMKLGKKIRLRSKKLDRKRGMRKRGQWPPSKVNKLKNV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.006G028500 [exp]	0	1
AT4G14910		HISN5B, IGPD	HISTIDINE BIOSYNTHESIS 5B (.1....		Potri.010G087600 [exp]	1.41	0.9776
					Potri.006G029500 [exp]	1.73	0.9772
AT5G23070			Thymidine kinase (.1)		Potri.006G015800 [exp]	2.23	0.9476
AT4G25370			Double Clp-N motif protein (.1...		Potri.015G131700 [exp]	2.82	0.9540
AT4G39470			Tetratricopeptide repeat (TPR)...		Potri.007G079200 [exp]	5.47	0.9363
AT3G54826			Zim17-type zinc finger protein...		Potri.008G037300 [exp]	6.92	0.9153
AT1G53530			Peptidase S24/S26A/S26B/S26C f...		Potri.007G071400 [exp]	8.24	0.8879
AT5G55210			unknown protein		Potri.001G356400 [exp]	8.48	0.9302
					Potri.014G049100 [exp]	10.67	0.9004
AT2G41000			Chaperone DnaJ-domain superfam...		Potri.006G024700 [exp]	10.81	0.9243

Compare expression of checked genes

Potri.006G028500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.