Plant FIBer expression Database

Potri.006G028601 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G027800
[exp]
206 / 2e-67 ND /
Potri.006G028000
[exp]
204 / 9e-67 ND /
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0066 Trefoil PF00652 Ricin_B_lectin Ricin-type beta-trefoil lectin domain
Representative CDS sequence
>Potri.006G028601.1 pacid=42768688 polypeptide=Potri.006G028601.1.p locus=Potri.006G028601 ID=Potri.006G028601.1.v4.1 annot-version=v4.1
ATGAAGCTGTGGATTGTGTTGGCAACATATCTTTTGTCGACTGTACTCGTGGCGAGTACAGAAGCTGGGAACATGGATTCATTGGCAATAGATCAAACTG
GGAGGGACATGATCATCCGCTCTGTCGTGCCAAAAAATGATGATATTGTTTCTGGTGCAAAGTCCACACAACACATTGTTGGCATAAATAACTTGTGTGT
TGACGTGCTTCTTGATCTCTACTTTGATGGAAACGTTGTACAGTTGAAGCCGTGTAAATCTAACGGAGATGTGAATCAACAATGGAGCTTGGAGAAGGAC
GGAACCATTCAATCTAATTGCAAGTGTTTGGCCACAAACGATGTCGCGGGTCTCCCCGTGATTTTATCTTGCAACGACAGAGGTTTTTATCATGCCTCCT
GA
AA sequence
>Potri.006G028601.1 pacid=42768688 polypeptide=Potri.006G028601.1.p locus=Potri.006G028601 ID=Potri.006G028601.1.v4.1 annot-version=v4.1
MKLWIVLATYLLSTVLVASTEAGNMDSLAIDQTGRDMIIRSVVPKNDDIVSGAKSTQHIVGINNLCVDVLLDLYFDGNVVQLKPCKSNGDVNQQWSLEKD
GTIQSNCKCLATNDVAGLPVILSCNDRGFYHAS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.006G028601
[exp]
0 1
AT4G27290 S-locus lectin protein kinase ... Potri.001G414000
[exp]
1.41 0.9985
AT2G16850 PIP3B, PIP2;8 PLASMA MEMBRANE INTRINSIC PROT... Potri.005G109300
[exp]
3.16 0.9973 MDPIP1.1
Potri.006G027800
[exp]
3.16 0.9977
AT4G36250 ALDH3F1 aldehyde dehydrogenase 3F1 (.1... Potri.001G259100
[exp]
3.46 0.9976
AT5G15310 MYB ATMYB16, ATMIXT... myb domain protein 16 (.1.2) Potri.017G086300
[exp]
5.29 0.9962
AT2G26250 KCS10, FDH FIDDLEHEAD, 3-ketoacyl-CoA syn... Potri.006G218000
[exp]
8.36 0.9937
AT3G04720 HEL, PR-4, PR4 HEVEIN-LIKE, pathogenesis-rela... Potri.013G041700
[exp]
9.53 0.9937 Pt-PRP4.3
AT5G33370 GDSL-like Lipase/Acylhydrolase... Potri.019G024800
[exp]
10.95 0.9961
AT5G01740 Nuclear transport factor 2 (NT... Potri.016G129600
[exp]
11.31 0.9808
AT4G38770 ATPRP4, PRP4 ARABIDOPSIS THALIANA PROLINE-R... Potri.004G168600
[exp]
12.00 0.9946

Potri.006G028601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.