Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24430 65 / 1e-11 NAC ANAC039, ANAC038 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) AT5G46590 60 / 5e-10 NAC ANAC096 NAC domain containing protein 96 (.1) AT2G18060 60 / 8e-10 NAC ANAC037, VND1 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) AT3G15170 59 / 1e-09 NAC ATNAC1, CUC1, ANAC054 CUP-SHAPED COTYLEDON1, Arabidopsis NAC domain containing protein 54, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G66300 59 / 1e-09 NAC ANAC105, VND3 VASCULAR-RELATED NAC-DOMAIN 3, Arabidopsis NAC domain containing protein 105, NAC domain containing protein 105 (.1) AT1G02230 58 / 3e-09 NAC ANAC004 NAC domain containing protein 4 (.1) AT5G39820 58 / 3e-09 NAC ANAC094 NAC domain containing protein 94 (.1) AT4G36160 58 / 3e-09 NAC ANAC076, VND2 VASCULAR-RELATED NAC-DOMAIN 2, NAC domain containing protein 76 (.1) AT1G12260 58 / 3e-09 NAC ANAC007, VND4, EMB2749 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) AT3G10480 58 / 5e-09 NAC ANAC050 NAC domain containing protein 50 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G028300 [exp] 376 / 1e-129 AT3G10480 74 / 5e-14 NAC domain containing protein 50 (.1.2.3) Potri.006G028900 [exp] 248 / 5e-81 AT3G10480 71 / 8e-14 NAC domain containing protein 50 (.1.2.3) Potri.006G029200 [exp] 245 / 1e-80 AT3G10480 67 / 8e-13 NAC domain containing protein 50 (.1.2.3) Potri.015G002900 [exp] 176 / 2e-51 AT1G71930 71 / 2e-13 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.016G027900 [exp] 172 / 6e-51 AT2G24430 66 / 8e-12 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.019G063000 [exp] 82 / 3e-18 AT1G79580 56 / 4e-09 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.014G163600 [exp] 71 / 1e-13 AT5G62380 58 / 3e-09 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.002G181800 [exp] 67 / 4e-12 AT4G01550 138 / 1e-35 NAC with Transmembrane Motif 2, NAC domain containing protein 69 (.1.2) Potri.006G231300 [exp] 67 / 4e-12 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033699 [exp] 105 / 6e-25 AT3G04060 49 / 6e-06 NAC domain containing protein 46 (.1) Lus10031639 [exp] 104 / 1e-24 AT3G55210 48 / 8e-06 NAC domain containing protein 63 (.1) Lus10033676 [exp] 98 / 2e-22 AT3G10480 72 / 4e-13 NAC domain containing protein 50 (.1.2.3) Lus10010294 [exp] 93 / 7e-21 AT5G46590 59 / 1e-09 NAC domain containing protein 96 (.1) Lus10004531 [exp] 91 / 5e-20 AT2G24430 50 / 2e-06 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10008200 [exp] 83 / 3e-18 ND 43 / 6e-05 Lus10007204 [exp] 84 / 5e-18 ND 43 / 2e-04 Lus10008240 [exp] 84 / 1e-17 AT1G33060 50 / 1e-06 NAC 014 (.1.2) Lus10009858 [exp] 80 / 2e-16 AT5G62380 53 / 1e-07 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Lus10031595 [exp] 77 / 2e-16 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.006G028700.1 pacid=42767127 polypeptide=Potri.006G028700.1.p locus=Potri.006G028700 ID=Potri.006G028700.1.v4.1 annot-version=v4.1 ATGCAAAAAATTCATACTCTCTTACCTCCAGGATTCATTTTCCGCCCCACTGGCGAACAATTGATCGGCCATTATCTACACCACAAGGTCCATGGACGTT TAACCGTCGAAGCCGACGATATGATCAAGGACTACAATCTTTACGGTGCAGAAGAACCCTGGGAACTATTCAACAAGGTCACAGGCCACAAGGAAGGTGA TGATGTTCTCTATTGTTTTACAACATTGGATAAGAAAACAGCCAAAAGTACTAAGAGGATGCGTAGAACTGTTGGTACTAATGGCGGTAAGTGGCATGGT GACAGTCTTGAAGAAGTGATATATAGACTAGATAATAGAGAGTTTAAAGGAACGAAGAGAAGATTCCGTTACCAGAACAAACAACGACGAGACAAGCATG GTTGTTGGACACTGCTGGAGTATGGTTCACAATCTATTTCTGACAACATTGTGATCTGTGAACTTAAGATGAGTGACCATGGTCTTAAAGAATCAAGAAA AAGGAAGTCGATGTGGCCTCTGCCCTCTGGAGATATGGGGCTTGAGGCGCCGGCAATTGTCAACATCGAACCTGCCTTGCGATTACAGCCTCAGCAAGCA AACTTCATTCAAGAACCAATGATTAGTGAACATCAACAGGTGGCGTTTGCAAGTTTCAGTGATAATCATCAGAAGGTGGTGCTTCAGTCAGAAGCTGTCT TTGATGGTTATGGAAGGAGCCAGAATATTGTTGAGAGTTTCTACGAGCATCCAAAAATCAGCTTTGAACCTATGAAGGCCGAAGAATCTAAGATCATCAA GAATCAGGAGATCACGGGGCTTGCAGATTTCCCTACACAAGATTCTTTTGAGAATGCAGCAGCAATCATCAACTCTGAGCCAATGACGTCGGCTTATGAA AATCAACAGATGGAGCCTGCAAGCTACAATGGTGGTGGAGGGGTTTGTCCTGCTGGTGATAATGCGGTAACTCCTGAGAATGCAGCACCAGCAGTGAGTG CTATCCCTGCTATGGGACATAGCATATATTAG
AA sequence Show only first row Show all	>Potri.006G028700.1 pacid=42767127 polypeptide=Potri.006G028700.1.p locus=Potri.006G028700 ID=Potri.006G028700.1.v4.1 annot-version=v4.1 MQKIHTLLPPGFIFRPTGEQLIGHYLHHKVHGRLTVEADDMIKDYNLYGAEEPWELFNKVTGHKEGDDVLYCFTTLDKKTAKSTKRMRRTVGTNGGKWHG DSLEEVIYRLDNREFKGTKRRFRYQNKQRRDKHGCWTLLEYGSQSISDNIVICELKMSDHGLKESRKRKSMWPLPSGDMGLEAPAIVNIEPALRLQPQQA NFIQEPMISEHQQVAFASFSDNHQKVVLQSEAVFDGYGRSQNIVESFYEHPKISFEPMKAEESKIIKNQEITGLADFPTQDSFENAAAIINSEPMTSAYE NQQMEPASYNGGGGVCPAGDNAVTPENAAPAVSAIPAMGHSIY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Potri.006G028700 [exp]	0	1
AT5G57510			unknown protein		Potri.018G006800 [exp]	5.47	0.6861
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.011G112900 [exp]	21.02	0.6301
AT3G44716			unknown protein		Potri.009G148200 [exp]	22.89	0.6634
AT2G33845			Nucleic acid-binding, OB-fold-...		Potri.011G114800 [exp]	34.52	0.6553
AT5G48890	C2H2ZnF	LATE	LATE FLOWERING, C2H2-like zinc...		Potri.002G238700 [exp]	51.84	0.5686
AT5G55830			Concanavalin A-like lectin pro...		Potri.011G093700 [exp]	55.64	0.6160
AT3G55550			Concanavalin A-like lectin pro...		Potri.016G101000 [exp]	66.97	0.6061	Pt-LECRK7.1
AT2G17070			Arabidopsis protein of unknown...		Potri.009G142500 [exp]	79.39	0.6242
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.011G113300 [exp]	85.09	0.5812
AT2G39050		ArathEULS3	Euonymus lectin S3, hydroxypro...		Potri.013G054100 [exp]	172.58	0.5748

Compare expression of checked genes

Potri.006G028700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.