Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10480 70 / 2e-13 NAC ANAC050 NAC domain containing protein 50 (.1.2.3) AT3G10490 66 / 2e-12 NAC ANAC051, ANAC052 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) AT5G39820 63 / 3e-11 NAC ANAC094 NAC domain containing protein 94 (.1) AT5G62380 57 / 3e-09 NAC ANAC101, VND6 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) AT5G24590 57 / 7e-09 NAC TIP, ANAC091 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) AT3G15170 56 / 7e-09 NAC ATNAC1, CUC1, ANAC054 CUP-SHAPED COTYLEDON1, Arabidopsis NAC domain containing protein 54, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G10500 56 / 1e-08 NAC ANAC053 NAC domain containing protein 53 (.1) AT5G04400 56 / 1e-08 NAC ANAC077 NAC domain containing protein 77 (.1) AT2G17040 56 / 1e-08 NAC ANAC036 NAC domain containing protein 36 (.1) AT5G46590 55 / 2e-08 NAC ANAC096 NAC domain containing protein 96 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G029200 [exp] 388 / 1e-137 AT3G10480 67 / 8e-13 NAC domain containing protein 50 (.1.2.3) Potri.006G028300 [exp] 343 / 9e-118 AT3G10480 74 / 5e-14 NAC domain containing protein 50 (.1.2.3) Potri.006G028700 [exp] 246 / 3e-80 AT2G24430 65 / 1e-11 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.016G027900 [exp] 165 / 7e-49 AT2G24430 66 / 8e-12 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.015G002900 [exp] 156 / 7e-45 AT1G71930 71 / 2e-13 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.006G231300 [exp] 82 / 1e-17 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.014G163600 [exp] 81 / 5e-17 AT5G62380 58 / 3e-09 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.001G220500 [exp] 74 / 6e-15 AT1G77450 66 / 4e-12 NAC domain containing protein 32 (.1) Potri.019G063000 [exp] 66 / 2e-12 AT1G79580 56 / 4e-09 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033699 [exp] 90 / 4e-20 AT3G04060 49 / 6e-06 NAC domain containing protein 46 (.1) Lus10033676 [exp] 90 / 6e-20 AT3G10480 72 / 4e-13 NAC domain containing protein 50 (.1.2.3) Lus10010294 [exp] 81 / 6e-17 AT5G46590 59 / 1e-09 NAC domain containing protein 96 (.1) Lus10009858 [exp] 78 / 5e-16 AT5G62380 53 / 1e-07 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Lus10031639 [exp] 77 / 7e-16 AT3G55210 48 / 8e-06 NAC domain containing protein 63 (.1) Lus10022965 [exp] 73 / 2e-14 AT2G24430 62 / 1e-10 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10033279 [exp] 67 / 2e-12 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Lus10033652 [exp] 63 / 2e-11 AT1G62700 54 / 2e-08 VASCULAR RELATED NAC-DOMAIN PROTEIN 5, Arabidopsis NAC domain containing protein 26 (.1) Lus10025078 [exp] 63 / 8e-11 AT1G79580 69 / 1e-12 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10008200 [exp] 61 / 8e-11 ND 43 / 6e-05
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.006G028900.1 pacid=42766874 polypeptide=Potri.006G028900.1.p locus=Potri.006G028900 ID=Potri.006G028900.1.v4.1 annot-version=v4.1 ATGCAAGACATTCTTTCTCGCTTTTCTCCAGGATTCAGGTTCGACCCCACTGGCGAGCAATTGATCAGCTATTACCTAGCCCGCAAGGTCCATGGACGTT TAACCCCCGAAGAGACCGATATGATCAAGGTCTGCAATATTCTTTACGGAGAAGGAGCACGACCACCCTGGGAAATATTCAAGCTCGCAGGTCACAAGGT AGGTGATGATGCTCTCTATTTTTTCACAACATTGATTAAGAAAACACGCAAAAGTGGTGCTTGGAGGATGAGTAGAACTGTTGGTACTGATGGCGGTACG TGGCATGGTGACGGTGTTGAAGAAGTGACATGTAGACTAGATAATAGAGAGTTTAAAGGAACGAAGAGAAGATTCCGTTACCAGAACAACCAACGACCTG ACCAGAATGGTTGTTGGAACCTGCTGGAGTATGGTTCAGAATCTATCTCTGACAACATTGTGATCTGTAAACTTAAGATCAGTGAGCATGGTCTTAAAGA ATCAAGAAAAAGGAAGTCGATGCGGCCTCTGGCGGGAACTGTTTCGAATGAGGACAATGGAGGTTGCTCAGCTACTGGAGATACTTTCTATAGCATTCAG AATATTGGGCCAATGACGGCGGCTTATGAAAATCAACAGATGGAGCCTGCAAGCTACAATGGTGGTGTAGGGGTTTGTCCTGCTGGTGATAATGCGGTAA CTCCTGAGAATGCAGCACCAGCAGTGAGTGCTATCCCTGTTATGGATGCTTGCTTGACCGAGTCCTTGAACAATGAGACCAGCTGGTCTGCTAATTTCGA AGCATTACCAGATTTCAGGAGCTTATGGTCACCAAGATGGATCGAAGACCATTTCTAA
AA sequence Show only first row Show all	>Potri.006G028900.1 pacid=42766874 polypeptide=Potri.006G028900.1.p locus=Potri.006G028900 ID=Potri.006G028900.1.v4.1 annot-version=v4.1 MQDILSRFSPGFRFDPTGEQLISYYLARKVHGRLTPEETDMIKVCNILYGEGARPPWEIFKLAGHKVGDDALYFFTTLIKKTRKSGAWRMSRTVGTDGGT WHGDGVEEVTCRLDNREFKGTKRRFRYQNNQRPDQNGCWNLLEYGSESISDNIVICKLKISEHGLKESRKRKSMRPLAGTVSNEDNGGCSATGDTFYSIQ NIGPMTAAYENQQMEPASYNGGVGVCPAGDNAVTPENAAPAVSAIPVMDACLTESLNNETSWSANFEALPDFRSLWSPRWIEDHF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10480	NAC	ANAC050	NAC domain containing protein ...		Potri.006G028900 [exp]	0	1
AT3G13610			2-oxoglutarate (2OG) and Fe(II...		Potri.001G006750 [exp]	5.38	0.9458
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Potri.001G007700 [exp]	6.63	0.8475
AT1G65570			Pectin lyase-like superfamily ...		Potri.010G177501 [exp]	9.59	0.9279
AT3G13610			2-oxoglutarate (2OG) and Fe(II...		Potri.001G006800 [exp]	14.83	0.9266
AT4G24480			Protein kinase superfamily pro...		Potri.005G153100 [exp]	16.12	0.7584
AT3G13610			2-oxoglutarate (2OG) and Fe(II...		Potri.001G006901 [exp]	16.43	0.9261
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.009G166666 [exp]	26.68	0.9028
AT1G80830		ATNRAMP1, PMIT1...	natural resistance-associated ...		Potri.005G181100 [exp]	27.65	0.9021	Pt-NRAMP1.4
AT4G19690		ATIRT1, IRT1	ARABIDOPSIS IRON-REGULATED TRA...		Potri.015G117900 [exp]	29.15	0.9015	Pt-ZIP6.4
AT3G12900			2-oxoglutarate (2OG) and Fe(II...		Potri.005G097900 [exp]	30.57	0.9011

Compare expression of checked genes

Potri.006G028900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.