Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10480 67 / 1e-12 NAC ANAC050 NAC domain containing protein 50 (.1.2.3) AT3G10490 62 / 2e-11 NAC ANAC051, ANAC052 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) AT5G39820 62 / 5e-11 NAC ANAC094 NAC domain containing protein 94 (.1) AT3G10500 58 / 1e-09 NAC ANAC053 NAC domain containing protein 53 (.1) AT4G01520 57 / 2e-09 NAC ANAC067 NAC domain containing protein 67 (.1) AT5G62380 57 / 2e-09 NAC ANAC101, VND6 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) AT1G65910 57 / 3e-09 NAC ANAC028 NAC domain containing protein 28 (.1) AT5G04410 57 / 3e-09 NAC NAC2, ANAC078 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) AT2G17040 56 / 5e-09 NAC ANAC036 NAC domain containing protein 36 (.1) AT5G24590 55 / 1e-08 NAC TIP, ANAC091 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G028900 [exp] 388 / 5e-138 AT3G10480 71 / 8e-14 NAC domain containing protein 50 (.1.2.3) Potri.006G028300 [exp] 326 / 9e-112 AT3G10480 74 / 5e-14 NAC domain containing protein 50 (.1.2.3) Potri.006G028700 [exp] 245 / 1e-80 AT2G24430 65 / 1e-11 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.016G027900 [exp] 173 / 1e-52 AT2G24430 66 / 8e-12 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.015G002900 [exp] 167 / 2e-49 AT1G71930 71 / 2e-13 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.006G231300 [exp] 82 / 8e-18 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.014G163600 [exp] 81 / 9e-18 AT5G62380 58 / 3e-09 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.019G063000 [exp] 70 / 2e-14 AT1G79580 56 / 4e-09 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.017G058100 [exp] 69 / 2e-13 AT5G62380 49 / 4e-06 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033676 [exp] 97 / 7e-23 AT3G10480 72 / 4e-13 NAC domain containing protein 50 (.1.2.3) Lus10033699 [exp] 94 / 5e-22 AT3G04060 49 / 6e-06 NAC domain containing protein 46 (.1) Lus10031639 [exp] 82 / 1e-17 AT3G55210 48 / 8e-06 NAC domain containing protein 63 (.1) Lus10010294 [exp] 79 / 1e-16 AT5G46590 59 / 1e-09 NAC domain containing protein 96 (.1) Lus10009858 [exp] 76 / 8e-16 AT5G62380 53 / 1e-07 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Lus10022965 [exp] 73 / 9e-15 AT2G24430 62 / 1e-10 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10033652 [exp] 72 / 1e-14 AT1G62700 54 / 2e-08 VASCULAR RELATED NAC-DOMAIN PROTEIN 5, Arabidopsis NAC domain containing protein 26 (.1) Lus10008240 [exp] 69 / 2e-13 AT1G33060 50 / 1e-06 NAC 014 (.1.2) Lus10008200 [exp] 68 / 2e-13 ND 43 / 6e-05 Lus10025078 [exp] 68 / 5e-13 AT1G79580 69 / 1e-12 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.006G029200.1 pacid=42770361 polypeptide=Potri.006G029200.1.p locus=Potri.006G029200 ID=Potri.006G029200.1.v4.1 annot-version=v4.1 ATGCAAGACATTCTTTCTCGCTTTTCTCCAGGATTCAGGTTCGACCCCACTGGCGAGCAATTGATCAGCTATTACCTAGCCCGCAAGGTCCATGGACGTT TAACCCCCGAAGAGACCGATATGATCAAGGTCTGCAATATTCTTTACGGAGAAGGAGCACGACCACCCTGGGAAATATTCAAGCTCGCAGGTCACAAGGG AGGTGATGATGCTCTCTATTTTTTCACAACATTGATTAAGAAAACACGCAAAAGTGGTGCTCGGAGGATGAGTAGAACTGTTGGTACTGATGGCGGTACG TGGCATGGTGACGGTGTTGAAGAAGTGACATGTAGACTAGATAATAGAGAGTTTAAAGGAACGAAGAGAAGATTCCGTTACCAGAACAAACAACGACCAG ACCAGCATGGTTGTTGGACACTGCTGGAGTATGGTTCAGAATCTATTTCTGAAAACGTTGTGATCTGTAAACTTAAGATCAGTGAGCATGGTCTTAAAGA ATCAAGAAAAAGAAAGCGGATGGATTATTCATCAGAAGGGGTTTGTCTTGCTGGTGATAATGCGGTAACTCCTGAGAATGCAGCACCAGCAGTGAGTGCT ATCCCTGCTATGGGACATAGCATGCGCGATACCTTGGAGAATGACCCCAACTGGTTTGAGAATCACCAAGGATTGATGGGAACCAATTTTTCAATGGAGT ATTGA
AA sequence Show only first row Show all	>Potri.006G029200.1 pacid=42770361 polypeptide=Potri.006G029200.1.p locus=Potri.006G029200 ID=Potri.006G029200.1.v4.1 annot-version=v4.1 MQDILSRFSPGFRFDPTGEQLISYYLARKVHGRLTPEETDMIKVCNILYGEGARPPWEIFKLAGHKGGDDALYFFTTLIKKTRKSGARRMSRTVGTDGGT WHGDGVEEVTCRLDNREFKGTKRRFRYQNKQRPDQHGCWTLLEYGSESISENVVICKLKISEHGLKESRKRKRMDYSSEGVCLAGDNAVTPENAAPAVSA IPAMGHSMRDTLENDPNWFENHQGLMGTNFSMEY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10480	NAC	ANAC050	NAC domain containing protein ...		Potri.006G029200 [exp]	0	1
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Potri.001G266900 [exp]	14.83	0.9056	Pt-FRD3.2
AT1G65690			Late embryogenesis abundant (L...		Potri.019G102500 [exp]	17.40	0.8318
AT2G28160	bHLH	ATFIT1, ATBHLH2...	ARABIDOPSIS FE-DEFICIENCY INDU...		Potri.009G005600 [exp]	20.12	0.9002
AT5G05340			Peroxidase superfamily protein...		Potri.013G154400 [exp]	20.97	0.8690	Pt-PRX1.9
AT1G65570			Pectin lyase-like superfamily ...		Potri.010G177601 [exp]	21.90	0.8902
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125851 [exp]	24.49	0.8592
AT5G19890			Peroxidase superfamily protein...		Potri.003G214500 [exp]	24.97	0.8931	PRX1.10
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.015G006000 [exp]	26.38	0.8901
					Potri.008G144650 [exp]	30.96	0.8108
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G134501 [exp]	32.55	0.8795

Compare expression of checked genes

Potri.006G029200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.