Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RPT1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58290 772 / 0 RPT3 regulatory particle triple-A ATPase 3 (.1) AT4G29040 385 / 1e-131 RPT2A regulatory particle AAA-ATPase 2A (.1) AT2G20140 384 / 4e-131 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) AT5G19990 314 / 4e-104 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G20000 313 / 8e-104 RPT6A AAA-type ATPase family protein (.1) AT1G53750 313 / 2e-103 RPT1A regulatory particle triple-A 1A (.1) AT1G09100 311 / 5e-103 RPT5B 26S proteasome AAA-ATPase subunit RPT5B (.1) AT3G05530 311 / 9e-103 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1) AT1G45000 304 / 2e-100 AAA-type ATPase family protein (.1.2) AT5G43010 303 / 4e-100 RPT4A regulatory particle triple-A ATPase 4A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G028000 [exp] 820 / 0 AT5G58290 781 / 0.0 regulatory particle triple-A ATPase 3 (.1) Potri.014G194700 [exp] 387 / 4e-132 AT4G29040 829 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.006G029100 [exp] 376 / 8e-132 AT5G58290 308 / 2e-105 regulatory particle triple-A ATPase 3 (.1) Potri.002G252600 [exp] 385 / 3e-131 AT4G29040 838 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.006G216600 [exp] 313 / 3e-103 AT1G53750 804 / 0.0 regulatory particle triple-A 1A (.1) Potri.013G016800 [exp] 312 / 4e-103 AT3G05530 800 / 0.0 regulatory particle triple-A ATPase 5A (.1) Potri.001G161700 [exp] 312 / 5e-103 AT1G53750 809 / 0.0 regulatory particle triple-A 1A (.1) Potri.008G144100 [exp] 310 / 3e-102 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.005G025100 [exp] 309 / 4e-102 AT3G05530 795 / 0.0 regulatory particle triple-A ATPase 5A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006854 [exp] 523 / 0 AT5G58290 526 / 0.0 regulatory particle triple-A ATPase 3 (.1) Lus10037597 [exp] 419 / 4e-148 AT5G58290 419 / 7e-149 regulatory particle triple-A ATPase 3 (.1) Lus10006976 [exp] 377 / 4e-128 AT4G29040 828 / 0.0 regulatory particle AAA-ATPase 2A (.1) Lus10011901 [exp] 380 / 2e-127 AT2G20140 844 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10015524 [exp] 369 / 2e-126 AT2G20140 659 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10019995 [exp] 381 / 3e-124 AT2G20140 827 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10001313 [exp] 334 / 2e-112 AT4G29040 673 / 0.0 regulatory particle AAA-ATPase 2A (.1) Lus10029887 [exp] 313 / 1e-103 AT3G05530 837 / 0.0 regulatory particle triple-A ATPase 5A (.1) Lus10031815 [exp] 314 / 2e-103 AT1G53750 828 / 0.0 regulatory particle triple-A 1A (.1) Lus10017762 [exp] 312 / 3e-103 AT5G19990 797 / 0.0 regulatory particle triple-A ATPase 6A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF07728 [poplar] [flax] AAA_5 AAA domain (dynein-related subfamily)
Representative CDS sequence Show only first row Show all	>Potri.006G031000.1 pacid=42769777 polypeptide=Potri.006G031000.1.p locus=Potri.006G031000 ID=Potri.006G031000.1.v4.1 annot-version=v4.1 ATGTCGACAATGGTACTTGACCCGAGACCCGCCCCGACGGTGGAGCCAAGATCGGACCTTGTACCCGACCCAACAACAGTACCCATGGAGGACGACGACC TCTACAGCCGCTTTAAATCTCTGCAACGACAGCTAGAATTCATCGACATACAAGACGAGTATGTCAAGGATGAGCAGAAGAATCTGAAGCGAGAGCTACT TCGTGCGCAAGAAGAAGTGAAGCGGATCCAGTCGGTGCCGCTTGTGATCGGGCAGTTTATGGAGATGGTGGATCAGACTAATGGGATTGTTGGGTCTACT ACGGGTTCGAATTATTATGTGAGGATTTTGAGTACGATTGATAGGGAATTGTTGAAGCCGTCGGCTTCTGTGGCTTTGCATCGGCATTCGAATGCTCTTG TTGATGTTTTGCCACCTGAGGCTGATTCTAGTATTTCTCTGCTTAGTCAGAGTGAGAAACCTGATGTTACTTATAATGACATTGGAGGATGTGACATTCA AAAGCAGGAAATTCGTGAGGCGGTTGAGTTGCCACTGACTCACCATGAACTTTACAAACAAATTGGTATTGACCCCCCTCGTGGTGTGTTGCTCTATGGT CCACCTGGAACTGGAAAAACTATGCTCGCCAAGGCTGTTGCTAATCATACAACTGCAGCCTTTATTAGAGTTGTTGGCTCTGAGTTTGTTCAGAAGTATC TGGGTGAGGGACCCCGCATGGTTCGTGATGTTTTTCGTCTTGCTAAAGAGAACGCCCCAGCAATTATTTTTATTGATGAGGTAGATGCTATTGCTACTGC TAGGTTTGACGCTCAAACTGGAGCTGATAGAGAAGTTCAGCGTATTCTGATGGAACTACTGAATCAGATGGATGGGTTTGATCAGACGGTAAATGTTAAG GTCATAATGGCAACTAATAGGGCTGACACTTTGGACCCTGCTCTTCTGCGTCCCGGAAGACTTGACCGGAAAATTGAATTTCCTTTGCCTGATAGACGGC AAAAGAGGCTTGTTTTCCAGGTTTGCACTGCAAAAATGAATTTAAGTGATGAGGTGGACATGGAGGATTATGTGTCTCGACCTGATAAAATTAGTGCTGC CGAGATCGCAGCTATCTGCCAAGAAGCAGGCATGCATGCAGTACGCAAGAACAGGTATGTCATTCTCCCCAAGGACTTCGAGAAAGGCTACCGAACCAAT GTGAAGAAGCCTGACACTGACTTTGAGTTCTACAAGTGA
AA sequence Show only first row Show all	>Potri.006G031000.1 pacid=42769777 polypeptide=Potri.006G031000.1.p locus=Potri.006G031000 ID=Potri.006G031000.1.v4.1 annot-version=v4.1 MSTMVLDPRPAPTVEPRSDLVPDPTTVPMEDDDLYSRFKSLQRQLEFIDIQDEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQTNGIVGST TGSNYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYG PPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVK VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDMEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN VKKPDTDFEFYK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58290		RPT3	regulatory particle triple-A A...		Potri.006G031000 [exp]	0	1	RPT1.3
AT2G02050			NADH-ubiquinone oxidoreductase...		Potri.010G099900 [exp]	2.44	0.9022
AT5G52560		ATUSP	UDP-sugar pyrophosphorylase (....		Potri.002G077400 [exp]	2.82	0.8889
AT1G45000			AAA-type ATPase family protein...		Potri.005G231700 [exp]	3.31	0.9236	RPT4.1
AT5G23250			Succinyl-CoA ligase, alpha sub...		Potri.012G036200 [exp]	6.92	0.8791
AT4G38510			ATPase, V1 complex, subunit B ...		Potri.009G137800 [exp]	8.12	0.8587
AT3G08580		AAC1	ADP/ATP carrier 1 (.1.2)		Potri.001G267800 [exp]	8.36	0.9074	Pt-ANT1.1
AT2G03120		ATSPP	signal peptide peptidase (.1)		Potri.001G276700 [exp]	8.83	0.8960
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.005G146800 [exp]	9.21	0.8988
AT4G24550			Clathrin adaptor complexes med...		Potri.002G105100 [exp]	9.94	0.8711
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Potri.006G225700 [exp]	10.48	0.8878	TIF4.1

Compare expression of checked genes

Potri.006G031000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.