Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15780 236 / 1e-63 unknown protein AT2G10440 132 / 3e-31 unknown protein AT1G15770 90 / 2e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G028200 [exp] 1140 / 0 AT1G15780 252 / 4e-69 unknown protein Potri.003G012400 [exp] 254 / 8e-70 AT1G15780 557 / 2e-175 unknown protein Potri.001G204900 [exp] 233 / 5e-63 AT1G15780 575 / 0.0 unknown protein Potri.001G033400 [exp] 157 / 2e-39 AT1G15780 238 / 3e-66 unknown protein Potri.003G025500 [exp] 83 / 6e-17 AT1G15780 128 / 1e-32 unknown protein Potri.003G028089 [exp] 85 / 2e-16 AT1G15780 223 / 5e-60 unknown protein Potri.003G025200 [exp] 55 / 6e-09 AT1G15780 139 / 2e-39 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015323 [exp] 251 / 8e-69 AT1G15780 587 / 0.0 unknown protein Lus10025452 [exp] 240 / 5e-65 AT1G15780 248 / 3e-68 unknown protein Lus10025450 [exp] 163 / 2e-43 AT1G15780 454 / 8e-149 unknown protein Lus10026119 [exp] 95 / 1e-21 AT1G15780 128 / 3e-34 unknown protein Lus10023978 [exp] 44 / 7e-05 AT1G15780 71 / 4e-15 unknown protein Lus10015321 [exp] 45 / 0.0002 AT1G15780 78 / 5e-16 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0589 [poplar] [flax] KIX_like PF16987 [poplar] [flax] KIX_2 KIX domain
Representative CDS sequence Show only first row Show all	>Potri.006G031200.2 pacid=42770442 polypeptide=Potri.006G031200.2.p locus=Potri.006G031200 ID=Potri.006G031200.2.v4.1 annot-version=v4.1 ATGATAGACGAAAAACGTCTTAAGGGTTTTCAAGTTGAAGGGATGGCGACTCAAAGCCAGGATTGGAGAGCAGCATTGACTCCTGAAGTTAGACAGAAAG TTGTCAACAAAATACTGGCAAACTTGAGCAACCACTACCAGATGATCACGCCTTCTTCCGATCCTGAGTTTTTAACTCGACTAACGAACATTGCTGTGCA ATTCGAGGATAAGACATTCAGAATTTCAGCAACGAAGGAAAGTTATGTATATACAATAGGTAAGAAGATGAATTCGTTTGGTCCCATCAAGTCTGAAGCT TCCAAGACAACTGGTAAAAGTTCCTCAGGTCTAGGTCAGACCTTGATTGCAAACGATGTTGGGCAAAGCTCGGAGACAAATGCCGGCACACGATTTTCCC AACGTTTAGTCGGAAGCCAGTCTTCAGATCAGAAACTGAAGTACCAATTACAACAGCAGGAGTTTCAGGATGGGATCCTGAAGGATAAGGTCCAGAATAC TAGTAAGAGTTTTGTCATCCAACCTGACATTCTACACAGCCAACCTCATCAGCGGCAGCAGCATGTTACATCACAGAATACTCAGAATCAATTTTCTCAG CCGCCATCAGTAAAAACACAATACCGTCAAACACCATTTGCACAGCCATCAAATAGCCCAATGTTTCAACAGAATCAGCAACTCGGGAAGCAACGTGATG ATTCAGAGCAGTTACAATGGTCAATTCCCCAACAAAATGTTTTACCGTCATTCCAGCAGCCCCTGGGCCAACAAAGAGATGTTTCTAGAATGCAGCTTCA GCAAAAAATGGCTGGATCACAACCATTTATCTTCAATGCTCAATCGCATCGGAGTTCAAGCCCCATGATTCAACAACCAGGGGTTACAGCTTCTGAACAA GAAGTTCATAAAATCACACAGCCTGGTCAGTTGCATCAGATTCTGGGTTCTCAAAAACAAAGCGGCTTGTCTCAAGAAGGGATCCAGCGAAAACCACAAA CCTCAGCTTCCTTCCATCAGCAGAGGAGTATAGCTGATCAGCAGAAGCTTTTTCAGTCACAGATATCATTTGCTGGGTCCTCCTCAGCATCACTAGAGCC CAAATCATCAGGTCAACTAACCAATACAGCTGATGAGCTTGATGAGGCCTATCAAAAGCTTCAATGCTTTAAGCTACAGTATGGTCCACAACTCAAGAAA CTATACATATATTTTAAGTCCTTACTTGACAAGGCAACAGATCCGGAGCTGGTTAGAAAGAACATGAAGCAAGTGATTTGGATAGAAAAAGCCATGCAGG TTTTTTCATTACAGCGAAATCAGATGAAAAATGCTTCCAAGGAGAAGTTGGAGACGACCAAGGATGCAATTGTAAAGTATGTAAACCTCTTTCGGCAGAA GAGAGTTGCCTCAGTTGAGCAACAAGCAGAACTTAGTCTGCCGACTAGCGGTCAATCCCAAATATCTCAGCCTCCTCAAAGCTGGAATGGGAAACTCCAA TTCCCTCTAGTGAATTTAACTATGACAAATGGTTTGGGAAATTCATCTCCCACATCTTCAATGCAGTCAAGGGTTCCAAATTCGCAACCCAATTTTGTCA GTTCACTTCAATATAGTTCTGGAATGGGTTTGGAACAAAAGAATGGACCGAGTACGTTTCAGAAGTCAGCAAGGAAAACAGGCCAATATTTTGCTGGTTC ACCACAAAATAATAATTTTTTTAGCAATAGCAATGTGAATGCTTTCGATTCTCCATTTACTCATTACACAAGGCTGTTACAGAACTTCGAGCAACAAATG CAGAAACAAACTATTCAGCTCAAAAAGGAACAGATGCTGATGCGCAACAGTCAATCATGCGTCACTCCAGCTATTGAATCTACAGAAAATCTACATCAAC TACAGATACCAACTACTATAAATCAACTATACTCCAGTTCTCCTCGAAAGTCTCAGCTCTCTTCTGCTCAAATTGACCAGCAGAATTTTCCTTCAGCCTC TACTCCCTTGACTCCAACTTCAAGATATGTTGCATTGACCCAAGTTGATAACCAGACACAAAGTCAAAATCAATCTACGGCAACCGACACACCTGGGATA TCAGCCTCCCCTTTGCTCGAAGAGTTCACTAGCCCCTCCAACGCATCTGATACAAATCAACCATTCCAGCGCCTACTTCGAGCTGTAGAATCAATGTCAC CAGGGGTATTAAGCGCTGCTGTCCAGGATATTGACTCAGTTGTCAACATGGTCGATAAGATTGCTGGAGGATTAGCTGAAGGACACTCTCAGGCTGCTAT TGGTGAGGATTTGGTGTCTGAAACAAGGTTCCGTGTACAAGAAATGAACTTAGCATACCAACAGTCAAGCATTTATGAGAGAGAGATGGAGCAGAAATTT AGTGCCATGACCTGGGACACAGTCGGGCAGCCAATGCATCGGAAATCTGATTTTGATTCAACTACAACACCAAAGCTCAATAATTTGAGGATCAAGCCCA ACAAAGATCTGCTGGATGAAATCAGACGTGTAAACCAGCGATTGGTCGAAACTTTAGTAGAAGTTGATTCAACTGATGATGATTCTATATTACCTGAATC TAGTAAAGGAACAATCATCAAGTGTTCCTATACTGCTGTGTCTCTTAGTGGAGATTTAAAATCTTTGTCTTCATCTCCGACGTTCCCTGTACTTATCTTG CGCTTGCTTGTTCCAGCCGATTATCCTAATACTTCTTCTGTAATCTTTGATAAGTTACCTGTTGGTTGTGAAGAGCCAGAAGATTTGTCAGAGAAGACAA AGTTGAGATTCAGCACAGCTCTTAGGAACCTTTCTGAATCCATGTCTCTTCTGGAGATAGCAAAGACTTGGGATGCTTGTTGTCGAGCTGTGCTCTTAGA GTTTGTTAAACCATTTGGAGGAGGATGTTTCAGTTCGAGATATGGCAAATGGGAGGATTTCTTTACTATATAA
AA sequence Show only first row Show all	>Potri.006G031200.2 pacid=42770442 polypeptide=Potri.006G031200.2.p locus=Potri.006G031200 ID=Potri.006G031200.2.v4.1 annot-version=v4.1 MIDEKRLKGFQVEGMATQSQDWRAALTPEVRQKVVNKILANLSNHYQMITPSSDPEFLTRLTNIAVQFEDKTFRISATKESYVYTIGKKMNSFGPIKSEA SKTTGKSSSGLGQTLIANDVGQSSETNAGTRFSQRLVGSQSSDQKLKYQLQQQEFQDGILKDKVQNTSKSFVIQPDILHSQPHQRQQHVTSQNTQNQFSQ PPSVKTQYRQTPFAQPSNSPMFQQNQQLGKQRDDSEQLQWSIPQQNVLPSFQQPLGQQRDVSRMQLQQKMAGSQPFIFNAQSHRSSSPMIQQPGVTASEQ EVHKITQPGQLHQILGSQKQSGLSQEGIQRKPQTSASFHQQRSIADQQKLFQSQISFAGSSSASLEPKSSGQLTNTADELDEAYQKLQCFKLQYGPQLKK LYIYFKSLLDKATDPELVRKNMKQVIWIEKAMQVFSLQRNQMKNASKEKLETTKDAIVKYVNLFRQKRVASVEQQAELSLPTSGQSQISQPPQSWNGKLQ FPLVNLTMTNGLGNSSPTSSMQSRVPNSQPNFVSSLQYSSGMGLEQKNGPSTFQKSARKTGQYFAGSPQNNNFFSNSNVNAFDSPFTHYTRLLQNFEQQM QKQTIQLKKEQMLMRNSQSCVTPAIESTENLHQLQIPTTINQLYSSSPRKSQLSSAQIDQQNFPSASTPLTPTSRYVALTQVDNQTQSQNQSTATDTPGI SASPLLEEFTSPSNASDTNQPFQRLLRAVESMSPGVLSAAVQDIDSVVNMVDKIAGGLAEGHSQAAIGEDLVSETRFRVQEMNLAYQQSSIYEREMEQKF SAMTWDTVGQPMHRKSDFDSTTTPKLNNLRIKPNKDLLDEIRRVNQRLVETLVEVDSTDDDSILPESSKGTIIKCSYTAVSLSGDLKSLSSSPTFPVLIL RLLVPADYPNTSSVIFDKLPVGCEEPEDLSEKTKLRFSTALRNLSESMSLLEIAKTWDACCRAVLLEFVKPFGGGCFSSRYGKWEDFFTI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15780			unknown protein		Potri.006G031200 [exp]	0	1
AT5G09280			Pectin lyase-like superfamily ...		Potri.001G007400 [exp]	12.12	0.9103
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Potri.004G207900 [exp]	19.74	0.8881	RFS.2
AT1G25400			unknown protein		Potri.010G123600 [exp]	23.93	0.8366
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.017G010000 [exp]	28.67	0.8971
AT1G62050			Ankyrin repeat family protein ...		Potri.011G004500 [exp]	47.32	0.8178
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Potri.013G029900 [exp]	49.63	0.8883	DHQD3
					Potri.001G320601 [exp]	51.28	0.8908
AT3G18670			Ankyrin repeat family protein ...		Potri.011G019600 [exp]	53.10	0.8904
					Potri.010G076350 [exp]	54.09	0.8905
AT4G27290			S-locus lectin protein kinase ...		Potri.001G412700 [exp]	83.90	0.8489

Compare expression of checked genes

Potri.006G031200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.