Plant FIBer expression Database

Potri.006G031500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G028800
[exp]
168 / 1e-54 ND /
Potri.007G081350
[exp]
149 / 6e-47 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.006G031500.1 pacid=42769847 polypeptide=Potri.006G031500.1.p locus=Potri.006G031500 ID=Potri.006G031500.1.v4.1 annot-version=v4.1
ATGGCAGAGAAAAACAACATTGAAAAAACATCCAAAAGCCATGATTCCAGCCAAGACCCACCATTGCTAGCAACTTCTTCAAGCCAGAAATCCAAGAAAG
AAGAGCAGGAAACAATCAGGGAATCCAAGAGAAGAAAAAAATGCCCTACAGCACTTGACAAAATTGAAGAACTCGCCCCATCAAATCCAAACTTTTCCTT
CACTTTTGACACCCAATTCGGTGGCAATTCTCAAGAACCCACGCCCAAATTTGGATCTTTCAACTTGGTCGCATCAACCCAAGAAAGAGTGGATGATACC
GGTCATTGTTTCCATCAGAGCTTAGAAGACGAAGAGGGAGGCCATCAAGAAGAAGAAGTAGACAGGCAGCAGGGTGGGGTTAGTGAAGATGGAGTGGTCA
ATGTTAGCAAGATGTTGAGGAGGTCCATTGATGGGATTAGAGAGATTAAGTAA
AA sequence
>Potri.006G031500.1 pacid=42769847 polypeptide=Potri.006G031500.1.p locus=Potri.006G031500 ID=Potri.006G031500.1.v4.1 annot-version=v4.1
MAEKNNIEKTSKSHDSSQDPPLLATSSSQKSKKEEQETIRESKRRKKCPTALDKIEELAPSNPNFSFTFDTQFGGNSQEPTPKFGSFNLVASTQERVDDT
GHCFHQSLEDEEGGHQEEEVDRQQGGVSEDGVVNVSKMLRRSIDGIREIK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.006G031500
[exp]
0 1
AT5G42520 BBR_BPC BPC6, BBR/BPC6,... ARABIDOPSIS THALIANA BASIC PEN... Potri.005G235900
[exp]
2.82 0.6791
AT1G34360 translation initiation factor ... Potri.009G137000
[exp]
6.48 0.6412
Potri.001G178400
[exp]
18.33 0.5894
AT5G51120 PABN1, ATPABN1 polyadenylate-binding protein ... Potri.015G110800
[exp]
27.92 0.6121
AT2G18850 SET domain-containing protein ... Potri.006G168900
[exp]
29.56 0.5820
AT5G16040 Regulator of chromosome conden... Potri.004G101800
[exp]
32.06 0.6133
AT3G12410 Polynucleotidyl transferase, r... Potri.006G031400
[exp]
33.67 0.6119
AT4G24240 WRKY ATWRKY7, WRKY7 WRKY DNA-binding protein 7 (.1... Potri.002G123300
[exp]
35.32 0.5711
AT2G37990 ribosome biogenesis regulatory... Potri.005G231000
[exp]
40.90 0.6096
AT3G54840 ARA6, AtRABF1, ... Ras-related small GTP-binding ... Potri.010G226300
[exp]
52.64 0.5212 ARA6.1

Potri.006G031500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.