Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40850 490 / 1e-168 ATPI4KGAMMA1 ,PI4K GAMMA 1 phosphoinositide 4-kinase gamma 1 (.1) AT3G56600 476 / 1e-163 Protein kinase superfamily protein (.1.2) AT1G26270 359 / 2e-116 Phosphatidylinositol 3- and 4-kinase family protein (.1) AT2G03890 357 / 1e-115 UBDKGAMMA7, ATPI4KGAMMA7 ,PI4K GAMMA 7 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) AT1G13640 347 / 3e-112 Phosphatidylinositol 3- and 4-kinase family protein (.1) AT2G46500 207 / 2e-59 UBDKGAMMA4, ATPI4KGAMMA4 ,PI4K GAMMA 4 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) AT5G24240 199 / 2e-56 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) AT1G64460 187 / 8e-55 Protein kinase superfamily protein (.1) AT1G27570 60 / 3e-09 phosphatidylinositol 3- and 4-kinase family protein (.1.2) AT3G43950 49 / 2e-06 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G112200 [exp] 356 / 2e-115 AT2G03890 866 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.010G137400 [exp] 355 / 8e-115 AT2G03890 917 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.017G101500 [exp] 317 / 1e-100 AT2G03890 737 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.012G014600 [exp] 211 / 9e-61 AT5G24240 767 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Potri.015G013600 [exp] 209 / 7e-60 AT5G24240 747 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Potri.001G090300 [exp] 201 / 4e-57 AT2G46500 699 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Potri.014G099000 [exp] 196 / 3e-55 AT2G46500 784 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019197 [exp] 360 / 2e-116 AT2G03890 873 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10036834 [exp] 357 / 3e-115 AT2G03890 874 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10005095 [exp] 339 / 1e-108 AT2G03890 700 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10004005 [exp] 198 / 1e-58 AT2G46500 483 / 1e-169 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10030251 [exp] 198 / 1e-58 AT2G46500 484 / 3e-170 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10022411 [exp] 205 / 2e-58 AT5G24240 731 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Lus10001817 [exp] 204 / 2e-58 AT2G46500 665 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10003190 [exp] 203 / 2e-58 AT2G46500 587 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10018104 [exp] 202 / 1e-57 AT5G24240 689 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00454 [poplar] [flax] PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase
Representative CDS sequence Show only first row Show all	>Potri.006G031600.1 pacid=42769228 polypeptide=Potri.006G031600.1.p locus=Potri.006G031600 ID=Potri.006G031600.1.v4.1 annot-version=v4.1 ATGGCGGTAGCCATTGATCAACATCATGGATTCAAGCCATTTAAAAGATCTCAGAGATGTAGACTCCAATCTCTAACTAACTATGACTTAAACATTCTTG AAATTGACCAAACCAATCTTTCCAGCTTAAAACAAGCATTCGAAGTAGTTAAATTTCACAGAAGCTTCTCCAGTCCGTGTTTTTCCTTGGCCACTAGAGT TGAAGAAGAGCTCGACACTACTCCAAGGATTGAGATTCTTGGTGGCCATGGAGCCCCGAGAGTCCGTGATCTTGTTGTTGAGGTTGCCATAGCTTTGGCC TCCGGTGTTGATCCCATACCAGTATCAAGTGGACTAGGTGGTGCTTACTTTTTGCGCAGCAGGAATGGAGATAATATTGCACTGGCAAAACCAATTGATG AAGAACCTTTAGCCTTCAATAACCCGAAAGGCTTTGGGGGGCTGATGCTTGGCCAACCTGGTATGAAACGATCAATTCGAGTAGGTGAAACTGGACTTCG CGAATTAGCTGCTTATCTACTAGACCATGGTGGGTTTGCTGGTGTTCCTCCAACAGCATTAGTAAAGATTTCCAGTGTTGGGTTCCACGTTAACGGTGTT GAAAATATTTCAGCTCCGCCCTGCAAGATTGCCTCACTCCAACGTTTTGTAGAACATGAATTTGATGCTGGGGAATTAGGCTGTTCTGGTTTTTCAGTTG CTTCTGTTCATCAGATTGCGATTTTTGATGTAAGAGTCCTAAATCTTGACAGGCATGCTGGAAATATACTTGTAAAAAAGAACGATCAGAAGGAAAAATA TGCAGCCGGGGCAGCTGAGCTCGTGCCTATAGACCATGGACTTTGCCTACCTGAGTGGCTTGATGATCCTTATTTTGAATGGCTGCATTGGCCTCAAGCC TTAGTTCCCTTTTCAGAATCTGAACTTGTGTACATATCCAATCTTGATCCATTTAAAGATGCAGAGCTCTTGAGATCTGAGCTTAGTTCTTTAAGGGAAT CTTCTATCCGAGTTCTTGTTCTCTGCAGTATTTTCTTGAAGCAAGCTGCTGCGGCTGGCCTCTGCCTTGCCGATATAGGCAAAATGATGACCAGGGAGTC TTGTAGTGGAGAGGAAAGTATGAGTGTATTAGAGGATCTTTGCACAAAAGCAAAGGGAGCCGTTGTTAATGCATCAGATGATGAAGAGGATAATATGGAT AGCAGAGAAGAAAAGGACGAGTTTGAACTATTTCAATTCGATGAGGAGACTGAGCACATTTCTGCTGAGGTAATGGATCTCCATCAGCTCTTACAGTCCC CTACCGAGATTGCTAAGCCACCTAAAATTGCAAAATTCTCACCTGTAAGATCACTGCCTAGGTCGCAAGATGAAGAACTATCTCCGTTGTTTGAGGAAAC TGACCACGAAGTCAAAAACTATAACGATGGTGATGATAGCAACAGGACTTCCAAAGAAAATGGCGGAGACAACAATGGGGACGACAGCAAACTAGGGGGT TTAACGAGGAGCAAGAGCTACTCAGTCCGAAATAGGGCTTGCGAATCCGAGGGCATTTCTTTTGGAGACTTGAGTGAAGGTGAATGGAAATTGTTCTTAG AGTGTTTCGAGAAGCTTTTGCTGGAGGTTCTCGAGGGCACAAATTGTGGCAGCTTGAAGCAACGGTTGGGAACTTCTTGCCAGTTCTGA
AA sequence Show only first row Show all	>Potri.006G031600.1 pacid=42769228 polypeptide=Potri.006G031600.1.p locus=Potri.006G031600 ID=Potri.006G031600.1.v4.1 annot-version=v4.1 MAVAIDQHHGFKPFKRSQRCRLQSLTNYDLNILEIDQTNLSSLKQAFEVVKFHRSFSSPCFSLATRVEEELDTTPRIEILGGHGAPRVRDLVVEVAIALA SGVDPIPVSSGLGGAYFLRSRNGDNIALAKPIDEEPLAFNNPKGFGGLMLGQPGMKRSIRVGETGLRELAAYLLDHGGFAGVPPTALVKISSVGFHVNGV ENISAPPCKIASLQRFVEHEFDAGELGCSGFSVASVHQIAIFDVRVLNLDRHAGNILVKKNDQKEKYAAGAAELVPIDHGLCLPEWLDDPYFEWLHWPQA LVPFSESELVYISNLDPFKDAELLRSELSSLRESSIRVLVLCSIFLKQAAAAGLCLADIGKMMTRESCSGEESMSVLEDLCTKAKGAVVNASDDEEDNMD SREEKDEFELFQFDEETEHISAEVMDLHQLLQSPTEIAKPPKIAKFSPVRSLPRSQDEELSPLFEETDHEVKNYNDGDDSNRTSKENGGDNNGDDSKLGG LTRSKSYSVRNRACESEGISFGDLSEGEWKLFLECFEKLLLEVLEGTNCGSLKQRLGTSCQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40850		ATPI4KGAMMA1 ,P...	phosphoinositide 4-kinase gamm...		Potri.006G031600 [exp]	0	1
AT1G12420		ACR8	ACT domain repeat 8 (.1)		Potri.003G116600 [exp]	39.11	0.7871	ACR7.2
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Potri.001G012500 [exp]	51.57	0.8020
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.016G012500 [exp]	101.05	0.7765
AT1G36160		GSD1, PAS3, GK,...	PASTICCINO 3, GLOSSYHEAD 1, GU...		Potri.002G092700 [exp]	106.13	0.7467	ACCASE.2
AT1G71530			Protein kinase superfamily pro...		Potri.013G100100 [exp]	112.87	0.7440
AT2G35910			RING/U-box superfamily protein...		Potri.016G067900 [exp]	130.42	0.7605
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.001G065900 [exp]	164.88	0.7443
AT5G11600			unknown protein		Potri.018G043800 [exp]	166.00	0.7471
AT4G36520			Chaperone DnaJ-domain superfam...		Potri.002G033800 [exp]	169.24	0.7313	AUL1.3
AT1G15670			Galactose oxidase/kelch repeat...		Potri.001G178500 [exp]	196.73	0.7387

Compare expression of checked genes

Potri.006G031600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.