Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40840 1493 / 0 DPE2 disproportionating enzyme 2 (.1) AT5G64860 108 / 5e-24 DPE1 disproportionating enzyme (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G028900 [exp] 1870 / 0 AT2G40840 1481 / 0.0 disproportionating enzyme 2 (.1) Potri.007G081400 [exp] 115 / 2e-26 AT5G64860 849 / 0.0 disproportionating enzyme (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035408 [exp] 1103 / 0 AT2G40840 1078 / 0.0 disproportionating enzyme 2 (.1) Lus10031010 [exp] 1072 / 0 AT2G40840 1063 / 0.0 disproportionating enzyme 2 (.1) Lus10035845 [exp] 111 / 5e-25 AT5G64860 811 / 0.0 disproportionating enzyme (.1) Lus10036626 [exp] 94 / 2e-19 AT5G64860 482 / 1e-165 disproportionating enzyme (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0369 [poplar] [flax] GHD PF00686 [poplar] [flax] CBM_20 Starch binding domain CL0058 [poplar] [flax] Glyco_hydro_tim PF02446 [poplar] [flax] Glyco_hydro_77 4-alpha-glucanotransferase
Representative CDS sequence Show only first row Show all	>Potri.006G031700.5 pacid=42768071 polypeptide=Potri.006G031700.5.p locus=Potri.006G031700 ID=Potri.006G031700.5.v4.1 annot-version=v4.1 ATGGCAAATTTGGGATTGTTTACTGGGACCAAGATTGTGAAGTCAGTGAATGTGAGTTTTAGATTACCATATTATACTCACTGGGGTCAGAGACTGCTTG TGTGTGGATCTGAACCTGTCCTGGGTTCATGGGATGTGAAGAAAGGCTTGTTATTGAGCCCTGTGCATCAAGGTGAGGAGCTCACATGGTGTGGAAGTGT TGCAGTACCGAGTGAATTTAGTTGCGAGTACAGTTATTATGTGGTGGATGATGAAAAGAGTGTGTTGAGGCGGGAGATGGGAAAGAAGCGTAAATTGGTA TTGCCCGATGGGATAAATGGTGGAGAGAATGTGGAGCTTCATGATCTTTGGCAGACTGGTGGTGATGCCATCCCTTTCAGAAGTGCCTTCAAAGATGTCA TCTTTCGCCAAAGTTGGGGTTTGAACATAGAGAGACCCCTTGGAATTCAGAATAAGTTGGACATGGAAGATGCAGTCCTTGTCCATTTCAAAATTTGCTG CCCAAATGTAGAAGAAGAGACATCAGTATATGTAATTGGCAGCACCGCAAAGTTAGGGCAGTGGAAAGTTCACGATGGGCTTAAACTTAACTATGCTGGT GACTCAGTTTGGCAAGCAGATGTTGTGATGCAAAAGGGTGATTTTCCATTAAAGTATAAGTACTGTAAATACGGAAAGGCAGGAAACTTTTCTTTGGAAA CTGGTGCACATCGCGACCTTTCTATTGACTCTTCCAAAGTTCAGCCAAGATATATTTTCCTTTCAGATGGCATGATGCGAGAAATGCCTTGGAGGGGTGC TGGTGTTGCAATACCAATGTTTTCTGTTAGATCAGAAGCTGATCTTGGGGTTGGTGAGTTTCTTGACTTGAAGCTTCTTGTTGATTGGGCCGTTGAGTCA GGGTTCCATTTAGTCCAGCTTCTACCGATCAATGACACATCCGTGCATGGCATGTGGTGGGATTCATATCCATACAGCTCACTATCTGTGTTTGCATTGC ATCCACTATACCTGAGAGTAGAGGCACTTTCGGAAAATCTACCGGAGAATATCAAGAAAGAAATACAGGAAGCTAGAGAGCAGTTGGATGGAAAGGATGT TGATTATGAGGCTACACTGGCTACTAAACTTTCAATTGCCAAGAAAGTGTTTGAACAAGAGAAAGATTTGATACTCAACTCTAGTTCCTTTCATAAATAT TTCTCTGAGAATGAGGAATGGTTAAAGCCCTATGCAGCCTTTTGTTTTTTGCGGGACTTTTTCGAAACATCAGATCACAGCCAATGGGGTCGTTTTTCCT GTTTTACAGAAAAAAAGCTTGAGAAACTTGTCTCAAAAGACAGCTTGCACCACGACATAATTCGCTTCCATTATTATATCCAATTCCATTTGCATTTACA GTTGTCAGAAGCTGCTGAATATGCAAGAAATAAAGGGGTAATATTGAAAGGAGATCTACCTATTGGTGTAGACAGAAACAGTGTGGATACCTGGGTCTAT CCAAACTTGTTTCGCATGAACACCTCCACCGGAGCACCTCCAGATTACTTTGATAAAAATGGGCAGAATTGGGGCTTTCCAACTTATAATTGGGAGGAAA TGTCAAAAGACAACTATGCTTGGTGGCGTGCACGTCTAACACAGATGGCAAAATACTTTACAGCATACAGAATTGATCATATTCTAGGTTTCTTTAGGAT CTGGGAGCTTCCAGAGCATGCCATGACAGGTCTGATTGGGAAATTCCGGCCGTCTATCCCTCTAAGTAAGGAAGAACTTGAAAGAGAAGGAATTTGGGAC TTTGATAGGTTGAGCCTCCCATATATCCGGCAAGAGTTTGTACAGGAAAAATTTGGAGCTTCTTGGACCTTTATTGTGTCAAATTTTCTGAACGATTATC AGAAGGGCCGCTATGAGTTCAAGGAGGATTCTAACACGGAGAAAAAGATTGCTTCCAAGTTGAAGATGCTTGCAGAAAAGTCCATGTTATTGGAGAGTGA GGACAAGATACGCCGTGACCTGTTTGATCTTTTGAAGAATATAGTTCTTATTAGAGATCCTGAGGATGCAAGTAAATTCTATCCTCGTTTCAATCTCGAG GATACTTCAAGTTTTCAGGATTTGGATGACCACAGCAAAAATGTTCTCAGAAGATTGTACTATGATTACTATTTTCACCGGCAAGAAAATCTATGGAGGC AAAATGCTTTGAAGACTTTGCCTGCTCTCCTGAACTCGTCAGATATGCTAGCCTGTGGGGAAGATCTAGGTCTCATTCCTGCTTGTGTTCACCCTGTCAT GCAAGAACTAGGAATGATAGGTTTACGCATTCAACGTATGCCCAGTGAATCTGACCTGGAGTTTGGTATTCCTTCTCAGTACAGCTATATGACGGTGTGT GCTCCATCATGTCATGACTGCTCGACCTTTCGTGCTTGGTGGGAGGAAGATGAAGAAAGAAGATGCCGATATTTCAAGAACTTGGTGGGGCCTGATGCAA TTCCTTCTAGTCAATGTGTTCCAGATATAGCACATTTCGTCATAAGGCAACATGTTGAAGCTCCATCAATGTGGGCAATCTTCCCTCTTCAGGATTTGTT AGCACTAAAAGAAGAGTACACGACACGTCCAGCAACAGAGGAGACGATCAATGACCCAACAAATCCAAAACATTACTGGAGATACCGTGTACATGTAACA TTAGAGTCTCTGCTTAAGGATAAGGAACTCATAACAACCATCAAAGGTCTTGTTCGAGGGAGCGGACGCGCACATCCTTCTGTTCAAGAAACCGATGAGC TAGGGAATCAAGAAACAATAGTATTGATTCCAGGCAAACATCAAGTTACCACTGGTCAGGAAAAGATTTCCGTCGGAAAGCAACTAAATGGGGTTCCGAG AAAAGAGACTTGCGTTCCACAAGTCCTGTGA
AA sequence Show only first row Show all	>Potri.006G031700.5 pacid=42768071 polypeptide=Potri.006G031700.5.p locus=Potri.006G031700 ID=Potri.006G031700.5.v4.1 annot-version=v4.1 MANLGLFTGTKIVKSVNVSFRLPYYTHWGQRLLVCGSEPVLGSWDVKKGLLLSPVHQGEELTWCGSVAVPSEFSCEYSYYVVDDEKSVLRREMGKKRKLV LPDGINGGENVELHDLWQTGGDAIPFRSAFKDVIFRQSWGLNIERPLGIQNKLDMEDAVLVHFKICCPNVEEETSVYVIGSTAKLGQWKVHDGLKLNYAG DSVWQADVVMQKGDFPLKYKYCKYGKAGNFSLETGAHRDLSIDSSKVQPRYIFLSDGMMREMPWRGAGVAIPMFSVRSEADLGVGEFLDLKLLVDWAVES GFHLVQLLPINDTSVHGMWWDSYPYSSLSVFALHPLYLRVEALSENLPENIKKEIQEAREQLDGKDVDYEATLATKLSIAKKVFEQEKDLILNSSSFHKY FSENEEWLKPYAAFCFLRDFFETSDHSQWGRFSCFTEKKLEKLVSKDSLHHDIIRFHYYIQFHLHLQLSEAAEYARNKGVILKGDLPIGVDRNSVDTWVY PNLFRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMAKYFTAYRIDHILGFFRIWELPEHAMTGLIGKFRPSIPLSKEELEREGIWD FDRLSLPYIRQEFVQEKFGASWTFIVSNFLNDYQKGRYEFKEDSNTEKKIASKLKMLAEKSMLLESEDKIRRDLFDLLKNIVLIRDPEDASKFYPRFNLE DTSSFQDLDDHSKNVLRRLYYDYYFHRQENLWRQNALKTLPALLNSSDMLACGEDLGLIPACVHPVMQELGMIGLRIQRMPSESDLEFGIPSQYSYMTVC APSCHDCSTFRAWWEEDEERRCRYFKNLVGPDAIPSSQCVPDIAHFVIRQHVEAPSMWAIFPLQDLLALKEEYTTRPATEETINDPTNPKHYWRYRVHVT LESLLKDKELITTIKGLVRGSGRAHPSVQETDELGNQETIVLIPGKHQVTTGQEKISVGKQLNGVPRKETCVPQVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40840		DPE2	disproportionating enzyme 2 (....		Potri.006G031700 [exp]	0	1
AT1G01320			Tetratricopeptide repeat (TPR)...		Potri.014G098600 [exp]	1.00	0.9893
AT4G27290			S-locus lectin protein kinase ...		Potri.011G128600 [exp]	2.00	0.9663
AT1G01320			Tetratricopeptide repeat (TPR)...		Potri.002G170900 [exp]	3.46	0.9632
AT2G38330			MATE efflux family protein (.1...		Potri.016G126000 [exp]	4.47	0.9500
AT3G21250		ATMRP6, ABCC8	ARABIDOPSIS THALIANA MULTIDRUG...		Potri.003G034700 [exp]	4.58	0.9586
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Potri.002G113600 [exp]	5.00	0.9620
AT1G75430	HD	BLH11	BEL1-like homeodomain 11 (.1)		Potri.005G232000 [exp]	5.09	0.9475
AT5G65500			U-box domain-containing protei...		Potri.007G011500 [exp]	5.83	0.9420
					Potri.016G031166 [exp]	6.32	0.9535
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Potri.001G348000 [exp]	7.07	0.9315

Compare expression of checked genes

Potri.006G031700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.