Plant FIBer expression Database

Potri.006G031800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G56590 312 / 1e-100 hydroxyproline-rich glycoprotein family protein (.1.2)
AT3G10810 278 / 2e-87 zinc finger (C3HC4-type RING finger) family protein (.1)
AT1G10790 120 / 5e-30 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G029100
[exp]
518 / 1e-180 AT3G56590 287 / 3e-91 hydroxyproline-rich glycoprotein family protein (.1.2)
Potri.001G210600
[exp]
176 / 8e-49 AT1G10790 188 / 6e-55 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001613
[exp]
159 / 1e-42 AT3G56590 206 / 6e-62 hydroxyproline-rich glycoprotein family protein (.1.2)
Lus10022968
[exp]
160 / 7e-42 AT1G10790 214 / 8e-63 unknown protein
PFAM info
Representative CDS sequence
>Potri.006G031800.1 pacid=42767843 polypeptide=Potri.006G031800.1.p locus=Potri.006G031800 ID=Potri.006G031800.1.v4.1 annot-version=v4.1
ATGGGAAAAGTGGGAAATGGTGTTAATGGTAGTGAAGAGGAGCAAGGAATAGGTACAAGTGATGAGAATGGAGAGCAAAATGTAGAGAGGAGATTTTGTT
GTTTTGGATGTAAAGACAATTTTATTGTTACTAGGTTTATTGGATTTAGATGTGTTTTTGTACTTTTATTATCTGTTGCTGTTTTTCTGTCGGCTCTTTT
TTGGTTGCCTCCTTTTATAAAATTTGCAGATCAGGGGGGTCTGGATCTGGATTACAGGTTTAAAGATCATGATATAGTAGCAAGTTTCCTAGTCAATAAG
TCGGCTTCCTTGCTGGAGGACAATATATTGAAGCTTCAAGATGATATTTTTTATGAGATGAATGTTCCAAATACCAAGGTTGTTATCCTGTCTCTAGAGC
CTTTCACTGGATCAAACACAACAAAGGTCGTGTTTGGGGTTGATCCTCTTGAAAATGATTCAAAAATAACATCAACCGATCAAAGTCTAATCAGGAGCTT
GTTTGAATATTTGGTTGTAAACGACTCATCTCTCAGACTGACTGACTCCTTGTTCGGAGATGCCTTCTCTTTTGAGGTGCTAAAATTTCCTGGAGGAATT
ACCATTATTCCACCACAGAGTGCTTTTCTTTTGCAGAAAGTGCGAATACCATTCAACTTCACCTTGAATTTCTCTATTTTTCAAACACGGGAAAATTTTG
CAGATCTGAAAAGTCAACTGATGACAGGACTTCATCTAACAACCCGTGAGAACTTGTATATAAACTTATGGAATTCACAAGGTTCAACAGTGGCTCCCCC
TACTACTGTTTTGTCATCAGTTATACTGGTTATCGGGAATACCCCCAGGTTAAAGCAACTGGCTCAAACCATCAGAGGTCATTCCAAGAATCTTGGCCTG
AATAACACTGTTTTTGGTAAAGTGAAGCAGGTTCGTCTATCGTCCATCTTGCAACATTCTCTCCATGGTGGTGAAGACAGTGCCCCCTCACCTTCTCCTA
CATCTCTTCCTAACCCCCCTCACCACCACCGCCGCCACCACCACCACCACCGACACCACCACCACCACCACCACCACCACCACCACCACCACCACCACCA
CCACCATTCCCACCCCCACCATGCCCATGCTCCTGCAATTTCACCTGTACCTTCAACTAAGAGAAGTGCACCTGCACCTGTAGATGGTTCACCTGCCCCA
TTGAAAAGTTCACCCGCACCTCATAACAGCAACGGAGCAAAGCCTCCTGGTTGTCAATTTGGGTGTAAAAGAAGGTTTACAGGGAATGGCAGAAAGGGGT
CTCACTTAGCCCCTTCAAATGCACCTGGTAGTTCTCCTCACATGTCTGCCACCTCACCTCAACCTGACAATGGTCCACCATCAGTGTCACCAACCCCTTC
ACCAATTTCCCAAACAATTCCTGCATCTAGTCCTTTGCCAAATGTAGTCTTTGCCCATGCTCAGCCACCATCAGGGGGTAAACCTGAGGAGCCTTATGAC
ACAATGCCGTCAGTTTCACCATCACCGGCACCATCTTCATCTTCTTCAGGTCATCTCACTGTTCAATGGTCAATTGTGCTATGCCTGGCTGCTCTTGTAT
TACAATTATAA
AA sequence
>Potri.006G031800.1 pacid=42767843 polypeptide=Potri.006G031800.1.p locus=Potri.006G031800 ID=Potri.006G031800.1.v4.1 annot-version=v4.1
MGKVGNGVNGSEEEQGIGTSDENGEQNVERRFCCFGCKDNFIVTRFIGFRCVFVLLLSVAVFLSALFWLPPFIKFADQGGLDLDYRFKDHDIVASFLVNK
SASLLEDNILKLQDDIFYEMNVPNTKVVILSLEPFTGSNTTKVVFGVDPLENDSKITSTDQSLIRSLFEYLVVNDSSLRLTDSLFGDAFSFEVLKFPGGI
TIIPPQSAFLLQKVRIPFNFTLNFSIFQTRENFADLKSQLMTGLHLTTRENLYINLWNSQGSTVAPPTTVLSSVILVIGNTPRLKQLAQTIRGHSKNLGL
NNTVFGKVKQVRLSSILQHSLHGGEDSAPSPSPTSLPNPPHHHRRHHHHHRHHHHHHHHHHHHHHHHHHSHPHHAHAPAISPVPSTKRSAPAPVDGSPAP
LKSSPAPHNSNGAKPPGCQFGCKRRFTGNGRKGSHLAPSNAPGSSPHMSATSPQPDNGPPSVSPTPSPISQTIPASSPLPNVVFAHAQPPSGGKPEEPYD
TMPSVSPSPAPSSSSSGHLTVQWSIVLCLAALVLQL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G56590 hydroxyproline-rich glycoprote... Potri.006G031800
[exp]
0 1
AT3G57880 Calcium-dependent lipid-bindin... Potri.006G058900
[exp]
8.36 0.7655
AT4G22540 ORP2A OSBP(oxysterol binding protein... Potri.001G121700
[exp]
15.68 0.7695
AT5G15740 RRT1 O-fucosyltransferase family pr... Potri.004G113500
[exp]
17.05 0.7596
AT2G27930 PLATZ transcription factor fam... Potri.006G119400
[exp]
30.78 0.7586
AT2G27690 CYP94C1 "cytochrome P450, family 94, s... Potri.010G236700
[exp]
38.88 0.7457
AT5G06390 FLA17 FASCICLIN-like arabinogalactan... Potri.012G006200
[exp]
45.49 0.7456
AT1G09540 MYB AtMYB61 ARABIDOPSIS THALIANA MYB DOMAI... Potri.002G185900
[exp]
48.29 0.6827
AT1G48560 unknown protein Potri.003G188600
[exp]
53.21 0.6865
AT1G77610 EamA-like transporter family p... Potri.002G084500
[exp]
67.88 0.7243
AT4G24910 Protein of unknown function (D... Potri.015G096900
[exp]
69.60 0.7248

Potri.006G031800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.