Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65440 1983 / 0 GTB1 global transcription factor group B1 (.1.2.3) AT1G63210 1569 / 0 Transcription elongation factor Spt6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G029200 [exp] 2541 / 0 AT1G65440 1961 / 0.0 global transcription factor group B1 (.1.2.3) Potri.001G034300 [exp] 1304 / 0 AT1G65440 1251 / 0.0 global transcription factor group B1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011344 [exp] 2051 / 0 AT1G65440 1946 / 0.0 global transcription factor group B1 (.1.2.3) Lus10003130 [exp] 2032 / 0 AT1G65440 1938 / 0.0 global transcription factor group B1 (.1.2.3) Lus10029079 [exp] 1542 / 0 AT1G65440 1451 / 0.0 global transcription factor group B1 (.1.2.3) Lus10029085 [exp] 792 / 0 AT1G65440 761 / 0.0 global transcription factor group B1 (.1.2.3) Lus10034231 [exp] 457 / 4e-143 AT1G65440 426 / 2e-133 global transcription factor group B1 (.1.2.3) Lus10029034 [exp] 410 / 4e-131 AT1G65440 404 / 2e-130 global transcription factor group B1 (.1.2.3) Lus10013071 [exp] 288 / 8e-83 AT1G65440 275 / 7e-79 global transcription factor group B1 (.1.2.3) Lus10029078 [exp] 150 / 1e-41 AT1G65440 150 / 5e-43 global transcription factor group B1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0541 [poplar] [flax] SH2-like PF14633 [poplar] [flax] SH2_2 SH2 domain CL0198 [poplar] [flax] HHH PF14635 [poplar] [flax] HHH_7 Helix-hairpin-helix motif CL0580 [poplar] [flax] YqgF PF14639 [poplar] [flax] YqgF Holliday-junction resolvase-like of SPT6 CL0580 [poplar] [flax] PF14641 [poplar] [flax] HTH_44 Helix-turn-helix DNA-binding domain of SPT6
Representative CDS sequence Show only first row Show all	>Potri.006G031900.1 pacid=42769376 polypeptide=Potri.006G031900.1.p locus=Potri.006G031900 ID=Potri.006G031900.1.v4.1 annot-version=v4.1 ATGGGAAAAAACGTGGTTTCTGACGAAGAAGATGAGGTGGAGTTAGAAGACGAAGATGAGAGAGAGCCAGTTGATGGAGATAAAATTGGACGAGACGACG ACGAGGAGGAGGATGAAGAAGGGCAGGATGAATATGAGAAGGATGATTTTATAGTGGATGATGTCGAGGAGGAAGAAGAAGTGGAAGAAGAAGAGGATAG GGCAGATAGCGACGAGGAGAGGCACAAGAAGAAGAAGAAAAAGAAGAAAAGAGAAGCTGAGGATGTACTCGATGAAGATGACTACGAGCTCCTGCGAGAC AACAATGTGTACCACCATCGGCCAAAGGATAGCAAAAAATTTAAGCGTTTGAAGAAAGCCCAGAGGGATTCAGATGAGGACCGATATGGGCTTTCTGATG ACGAGTTTGATGGAAGTGGTAAAGGTGGTCGAACTGCTGAGGAGAAACTGAAGCGCAGCTTATTTGGTGATGATGAAGGGGTTCCACTTGAGGATATGCC TGAAGAGGAGGAGCAAGAAGAAGTGGAAGAGGATGCGGACATTGGTGACGAGGATGAGATGGCTGATTTTATTGTGGATGAAGATGATGATGATGGAACT CTAGTGAGACGCAAGAAGCTAAAGAAAAAGAAATCTCAGCAGGCATCTGGAGTTTCATCCTCTGCCTTGCAAGAAGCTCAAGAAATATTTGGTGATGTTG ATGAACTCATACAGATACGCAGACAAGGGTTAGAATCTAGTGAATGGAGAGAAAGGAGACTGGAAGATGAATTTGAGCCAACTGTCCTTTCTGAAAAATA CATGACTGAGAAAGATGATCAGATCCGGATGACTGATATTCCAGAAAGAATGCAGGTATCTGAGGGAAGCACTGGTCCTCCTCCATTGGATGATTTCAGC ATAATGGAGGAGAGCAACTGGATTTATAGTCAGATTGCAAGTGGAACATTACCTTTGTTTGCGGAGAGTGGACTGCTTATAAACAAGGATGATGTCACCC GATTTTTGGAATTACATCACATTCAGAAGTTAGATATTCCCTTCATTGCTATGTATCGGAAGGAAGAGTGTTTAAGCCTGTTGAAAGATCCCGAGCAACA TGAAGATGATGAAAATCCTTATGACACTGGTAGAATTCCCACATTCAAGTGGCACAAGGTGCTTTGGGCCATCCAGGACTTGGACAGGAAGTGGTTACTT CTTCAGAAACGAAAGAGTGCCCTCAATGCTTACTACAATAAGCGCTTTGAAGAAGAATCTCGACGGATATATGATGAAACAAGACTCAATTTAAACCAGC AGCTGTTTGAGTCAATTCTTAAATCACTCAAGACTGCAGAATCGGAAAGAGAGGTTGATGATGTTGATGCAAAATTTAACCTGCATTTTCCTCCTGGTGA GGTTGTCGTGGATGAAGGACAATACAAGAGGCCCATGCGGAGATCACAATACAGTGTCTGTAGTAAAGCTGGCCTATGGGAAGTTGCAAGCAAATTTGGG TACAGTGCCGAGCAACTGGGAATGCAGTTATCTTTATTAAAGATGGAGGACGAGTTGCAGGATGCCAAGGAAACACCAGAGGAGATGGCTTCAAATTTTA CATGTGCAATGTTTGAAAGTCCCCAAACAGTTCTTAAAGGGGCTAGGCACATGGCTGCAGTTGAGATAAGTTGTGAGCCCTGTGTCAGGAGATATGTCCG TTTAATTTTTATGGACAAGGCTGTAGTGTCTACGAGTCCAACATCAGATGGGAAAGCTGCTATAGATTCTTTCCATCAGTTTGCAGGTATCAAGTGGTTG CGTGAAAAGCCAGTCAAGAAGTTTGAGGATGCACAGTGGCTCCTTATCCAGAAAGCTGAAGAGGAGAAACTTCTTCAAGTCACTATTAAGCTTCCACAAA AAGTTATGGATCAACTGATTGATGACTGTAACGGTCGCTACCTGAGTATTGGTGTTAGTAAATATGCTCAACTGTGGAATGAGCAAAGGAGTTTGATACT GAAGGATGCACTCTTTGCTTTTTTGTTGCCTTCAATGGAGAAAGAGGCTAGGTCATTGTTGACAAGTAGAGCTAAAAACCGGTTGCTTTGGGAATATGGG AAGGTTTTTTGGAATAAAGTCTCTGTGGGCCCATATCAACGGAAAGAAAGTGATATTTCCATGGATGATGAAGCTGCACCTAGGGTTATGGCTTGCTGTT GGGGTCCTGGAAAGCCAGCAACTACTTTTGTGATGCTAGATTCATCTGGGGAGGTTTTAGATGTACTTTATGCTGGGTCCCTTACCTTACGATCTCAGCA TGCTAGTGATCAGCAACGCAAGAAAAATGATCAGCAACGTGTTCTGAAATTTATGACAGACCACCAGCCACACGTGGTTGTTCTTGGAGCTGTGCACTTG TCTTGTACTAAACTGAAGGATGACATTTACGAGATTATTTTTAAAATGGTGGAGGAAAATCCTAGAGATGTTGGACATGAGATGGATGAACTGAGTATTG TGTATGGGGACGAGTCTCTCCCTCGTCTTTATGAAAATTCTCGGATTTCTTCTGATCAACTACCTGGGCAGTCAGGCATTGTTAAACGGGCTGTTGCTCT TGGCCGTTATCTACAAAATCCCTTGGCTATGGTTGCAACGCTATGTGGACCAGCTAGGGAGATTCTATCTTGGAAACTAAATCCTTTGGAGAACTTTCTC ACTCCTGATGATAAATACATGGTGATTGAACAAGTCATGGTAGATGCCACAAACCAGGTGGGCTTAGACATTAATTTGGCCACAAGCCATGAATGGTTAT TTGCTCCTTTACAATTCATTTCTGGGCTTGGACCCAGAAAGGCAGCATCTTTGCAGAGGTCTCTGGTAAGAACTGGAGCGATTTTCACTCGCAAGGATTT TGTGACAGCTCATGGTCTTGGTAAAAAAGTGTTTGTCAATGCTGTTGGATTTTTGCGTGTCCGGAGGAGTGGCCTTGCTGCTAGCAGCAGCCAGTTCATT GACGTGTTGGATGATACAAGGATACATCCAGAGTCCTATGGTCTCGCACAGGAGTTGGCAAAAGTCATTTATGAAAAGGACAGTGGTGATGTAAATGATG ATGATGATGCACTAGAGATGGCAATAGAGCATGTTAAAGAGCGGCCTAATTTATTGAAAACATTTGTTTTCGATAAGTATCTCGAAGACAAGAAGCGGGA AAACAAGAAGGAGACTTTCATGGATATAAGAAGGGAATTAATACAAGGTTTCCAAGATTGGCGTAAACAGTATAAAGAACCAACCCAGGATGAGGAATTT TATATGATTTCAGGTGAAACCGAGGATACCCTTGCTGAAGGGATAATTGTACAAGCCACAGTTCGCAGGGTGCAAGGTGGAAAGGCAATATGTGCATTGG AATCTGGTCTGACTGGGATTCTTACGAAGGAGGACTACGCTGATGATTGGAGGGATATTCCTGAGTTGTCCGACAAGCTGCGTGAAGATGATATACTGAC TTGCAAGATAAAATCAATTCAGAAGAATAGATATCAAGTGTTCCTTGTTTGCAAAGACAGTGAGATGAGAAATAACCGATATCAGCAGGCCCGAAACCTT GATCGCTATTATCATGAAGACCAGAGCAGTCTGAGGAGTGAGCAGGAGAAGGTTCGCAAAGACAGGGAGCTTGCAAAGAAACATTTCAAGCCTAGGATGA TTGTTCATCCACGCTTCCAGAATATAACGGCTGATGAAGCAATGGAGTTCTTATCTGACAAGGATCCTGGAGAAAGTATTATTCGTCCTAGTTCTCGTGG GCCGTCGTATTTAACTCTAACTCTTAAAGTTTACAACGGAGTTTATGCTCACAAAGACATAGTTGAAGGTGGGAAGGAACACAAAGATATCACGAGTGTA CTTCGTATTGGGAAGACATTGAAAATTGGGGAGGACACATTTGAGGATTTGGATGAGGTAATGGACCGCTATGTTGATCCCTTGGTGAGCTACCTAAAGG CAATGCTAAGTTATCGCAAGTTCAGAAGTGGCACCAAAGTAGAAGTTGATGAGCTCCTTAGGATTGAGAAATCACAACAGCCTACTAGGATAGTTTATGC ATTTGGCATTTGTCATGAACACCCAGGCACATTCATTCTCACTTATATAAGGAGTACAAATCCCCATCACGAGTATGTTGGTCTATATCCCAAGGGATTC AAGTTCCGAAAGCGTATGTTTGAGGACATTGATCGGCTGGTGGCATATTTTCAAAAGCATATAGATGACTCCTTGCATGAATCAGCACCATCAATTAGGT CAGTTGCTGCTATGGTCCCAATGCGAAGCCCTGCAACTGGGGGCTCGTCCTGGGGTGGTTCAACCTATGAAGGTGGTCGGAGAGGGCAGTCTTTTGACAG AGATCGTTCTTCTGGTCCAGGTTCCAGGACAGGTCGAAGTGGTGGTAGTCGAGATGGTCACCAGAGTGGGGCACCAAGACCATACAGTGGACGAGGACGT GGTCGTGGCTCATATAACAATGGCGGGGGAAGTAATAGTGGCAATGAGAGGCGGGATTCTGGTTATGATAAGCCCAGATGGGATTCAGGAACCAAGGATG GTGATGAAGGCTGGGGCAGTTTCCCAGGAGCCAAAGTCCAAAACTCACCTGGCAGGGAAGCTTTTCCTGGTGGCTGGGGAGCTGGTGCAAGCAGTGGTGG AAATGGTTGGGGTGGTGGAGCTAGTGGTGGTGATAATAGTGGTTGGGGCCATGGAACTGATGGTGGGACCGATAGTGGGAATTCTGGGCGGGGTACTACT AGCTCGAAGAGAGATTCAGCACAAAGGGGGTGGGGTGCTGCTGGAGGTGGAAATGGCAATGGTAGTGACTCTGGTCATGGAAGTCGTGGTGGAGGCACTA ACGATGAGAATTCTGAGTGGGGGCAATAA
AA sequence Show only first row Show all	>Potri.006G031900.1 pacid=42769376 polypeptide=Potri.006G031900.1.p locus=Potri.006G031900 ID=Potri.006G031900.1.v4.1 annot-version=v4.1 MGKNVVSDEEDEVELEDEDEREPVDGDKIGRDDDEEEDEEGQDEYEKDDFIVDDVEEEEEVEEEEDRADSDEERHKKKKKKKKREAEDVLDEDDYELLRD NNVYHHRPKDSKKFKRLKKAQRDSDEDRYGLSDDEFDGSGKGGRTAEEKLKRSLFGDDEGVPLEDMPEEEEQEEVEEDADIGDEDEMADFIVDEDDDDGT LVRRKKLKKKKSQQASGVSSSALQEAQEIFGDVDELIQIRRQGLESSEWRERRLEDEFEPTVLSEKYMTEKDDQIRMTDIPERMQVSEGSTGPPPLDDFS IMEESNWIYSQIASGTLPLFAESGLLINKDDVTRFLELHHIQKLDIPFIAMYRKEECLSLLKDPEQHEDDENPYDTGRIPTFKWHKVLWAIQDLDRKWLL LQKRKSALNAYYNKRFEEESRRIYDETRLNLNQQLFESILKSLKTAESEREVDDVDAKFNLHFPPGEVVVDEGQYKRPMRRSQYSVCSKAGLWEVASKFG YSAEQLGMQLSLLKMEDELQDAKETPEEMASNFTCAMFESPQTVLKGARHMAAVEISCEPCVRRYVRLIFMDKAVVSTSPTSDGKAAIDSFHQFAGIKWL REKPVKKFEDAQWLLIQKAEEEKLLQVTIKLPQKVMDQLIDDCNGRYLSIGVSKYAQLWNEQRSLILKDALFAFLLPSMEKEARSLLTSRAKNRLLWEYG KVFWNKVSVGPYQRKESDISMDDEAAPRVMACCWGPGKPATTFVMLDSSGEVLDVLYAGSLTLRSQHASDQQRKKNDQQRVLKFMTDHQPHVVVLGAVHL SCTKLKDDIYEIIFKMVEENPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQSGIVKRAVALGRYLQNPLAMVATLCGPAREILSWKLNPLENFL TPDDKYMVIEQVMVDATNQVGLDINLATSHEWLFAPLQFISGLGPRKAASLQRSLVRTGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGLAASSSQFI DVLDDTRIHPESYGLAQELAKVIYEKDSGDVNDDDDALEMAIEHVKERPNLLKTFVFDKYLEDKKRENKKETFMDIRRELIQGFQDWRKQYKEPTQDEEF YMISGETEDTLAEGIIVQATVRRVQGGKAICALESGLTGILTKEDYADDWRDIPELSDKLREDDILTCKIKSIQKNRYQVFLVCKDSEMRNNRYQQARNL DRYYHEDQSSLRSEQEKVRKDRELAKKHFKPRMIVHPRFQNITADEAMEFLSDKDPGESIIRPSSRGPSYLTLTLKVYNGVYAHKDIVEGGKEHKDITSV LRIGKTLKIGEDTFEDLDEVMDRYVDPLVSYLKAMLSYRKFRSGTKVEVDELLRIEKSQQPTRIVYAFGICHEHPGTFILTYIRSTNPHHEYVGLYPKGF KFRKRMFEDIDRLVAYFQKHIDDSLHESAPSIRSVAAMVPMRSPATGGSSWGGSTYEGGRRGQSFDRDRSSGPGSRTGRSGGSRDGHQSGAPRPYSGRGR GRGSYNNGGGSNSGNERRDSGYDKPRWDSGTKDGDEGWGSFPGAKVQNSPGREAFPGGWGAGASSGGNGWGGGASGGDNSGWGHGTDGGTDSGNSGRGTT SSKRDSAQRGWGAAGGGNGNGSDSGHGSRGGGTNDENSEWGQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65440		GTB1	global transcription factor gr...		Potri.006G031900 [exp]	0	1
AT1G65440		GTB1	global transcription factor gr...		Potri.016G029200 [exp]	1.00	0.9385
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.007G014100 [exp]	2.64	0.8773
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Potri.009G047800 [exp]	3.16	0.9016
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Potri.003G022100 [exp]	3.87	0.8853	CHR928,PIE1.4
AT2G39260			binding;RNA binding (.1)		Potri.008G045400 [exp]	4.24	0.8710
AT2G27980			Acyl-CoA N-acyltransferase wit...		Potri.009G003900 [exp]	5.47	0.8820
AT1G13220		CRWN2, LINC2	LITTLE NUCLEI2, CROWDED NUCLEI...		Potri.008G114800 [exp]	6.00	0.8637
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Potri.014G013100 [exp]	6.48	0.8817
AT2G25320			TRAF-like family protein (.1)		Potri.006G256400 [exp]	7.34	0.8384
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Potri.001G274900 [exp]	7.54	0.8489

Compare expression of checked genes

Potri.006G031900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.