Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12390 216 / 2e-71 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) AT5G13850 210 / 2e-69 NACA3 nascent polypeptide-associated complex subunit alpha-like protein 3 (.1) AT3G49470 206 / 2e-67 NACA2 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1) AT4G10480 196 / 2e-63 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1), Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.2) AT1G33040 191 / 8e-62 NACA5 nascent polypeptide-associated complex subunit alpha-like protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G190800 [exp] 265 / 9e-91 AT3G12390 204 / 7e-67 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Potri.001G034400 [exp] 257 / 7e-88 AT3G12390 204 / 5e-67 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Potri.015G003300 [exp] 204 / 1e-66 AT3G49470 172 / 4e-54 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1) Potri.012G006700 [exp] 191 / 2e-61 AT3G49470 171 / 1e-53 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041610 [exp] 234 / 8e-79 AT3G12390 229 / 7e-77 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Lus10026133 [exp] 220 / 3e-74 AT3G12390 204 / 2e-68 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Lus10024109 [exp] 206 / 1e-68 AT3G12390 198 / 1e-65 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Lus10008687 [exp] 210 / 8e-67 AT3G15660 197 / 7e-62 A. THALIANA GLUTAREDOXIN 4, glutaredoxin 4 (.1.2) Lus10032927 [exp] 198 / 2e-64 AT3G49470 260 / 2e-88 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1) Lus10015579 [exp] 198 / 3e-64 AT3G49470 260 / 1e-88 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01849 [poplar] [flax] NAC NAC domain
Representative CDS sequence Show only first row Show all	>Potri.006G032000.1 pacid=42769940 polypeptide=Potri.006G032000.1.p locus=Potri.006G032000 ID=Potri.006G032000.1.v4.1 annot-version=v4.1 ATGACGACTGCTCAGTCTCAAGAAGAACTCCTTGCTGCTCATCTTGAACAACAAGAACTCAAACATGGTGAGCCTACAGTTGAGGACGAAGATGATGAGG ATGAATCTGATGAGGATGACGATGATTATGATGACAAGGATGATGAAGGGAAAGGAGATGTGGGCGGCCGGGGTAAGCAGAGCAGAAGTGAAAAGAAGAG TCGTAAGGCAATGCTGAAACTTGGAATGAAGCCACTCCCAGGTGTCAGCCGAGTTACAGTAAAAAAGAGCAAGAATATCATGTTTGTTATCTCAAAACCT GATGTTTTCAAGAGCCCCAATTCAGACACATACATTGTCTTTGGGGAAGCAAAGATTGAGGACTTGAGCTCCCAACTACAGACCCAGGCTGCTGAGCAGT TCAAGGCACCTAATCCAAGTACTTCCGCATCACAGCCTGAGCCATCGTCCACGGCTCAAGATGATGAAGATGTAGACGAGACTGGTGTGGAGCCCAAGGA TATTGAGTTGGTGATGACACAAGCCGGGGTTTCCAGATCAAAGGCTGTGAAAGCTCTCAAGGCTGCAGATGGTGATATCGTTACTGCCATCATGGAATTA ACAAACTGA
AA sequence Show only first row Show all	>Potri.006G032000.1 pacid=42769940 polypeptide=Potri.006G032000.1.p locus=Potri.006G032000 ID=Potri.006G032000.1.v4.1 annot-version=v4.1 MTTAQSQEELLAAHLEQQELKHGEPTVEDEDDEDESDEDDDDYDDKDDEGKGDVGGRGKQSRSEKKSRKAMLKLGMKPLPGVSRVTVKKSKNIMFVISKP DVFKSPNSDTYIVFGEAKIEDLSSQLQTQAAEQFKAPNPSTSASQPEPSSTAQDDEDVDETGVEPKDIELVMTQAGVSRSKAVKALKAADGDIVTAIMEL TN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12390			Nascent polypeptide-associated...		Potri.006G032000 [exp]	0	1
AT3G07930			DNA glycosylase superfamily pr...		Potri.014G189400 [exp]	2.82	0.7268
AT5G59970			Histone superfamily protein (....		Potri.007G013300 [exp]	5.00	0.6854
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Potri.004G230500 [exp]	9.89	0.6576
AT5G38720			unknown protein		Potri.017G108700 [exp]	12.84	0.7080
AT5G54880			DTW domain-containing protein ...		Potri.001G423900 [exp]	14.69	0.6796
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Potri.003G044700 [exp]	19.74	0.6574
AT5G17900			microfibrillar-associated prot...		Potri.019G039900 [exp]	20.04	0.6831
AT1G04230			Protein of unknown function (D...		Potri.010G078500 [exp]	31.43	0.6584
AT3G15080			Polynucleotidyl transferase, r...		Potri.001G373500 [exp]	35.72	0.6452
AT2G30260		U2B''	U2 small nuclear ribonucleopro...		Potri.013G153700 [exp]	37.45	0.6452

Compare expression of checked genes

Potri.006G032000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.