Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RHC1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40830 327 / 6e-112 RHC1A RING-H2 finger C1A (.1.2.3) AT3G56580 290 / 2e-97 RING/U-box superfamily protein (.1.2.3) AT3G10815 140 / 2e-40 RING/U-box superfamily protein (.1) AT3G19950 140 / 2e-39 RING/U-box superfamily protein (.1) AT1G60360 126 / 5e-34 RING/U-box superfamily protein (.1) AT3G13430 115 / 8e-30 RING/U-box superfamily protein (.1.2.3) AT1G55530 114 / 3e-29 RING/U-box superfamily protein (.1) AT4G26400 113 / 1e-28 RING/U-box superfamily protein (.1.2) AT5G56340 112 / 4e-28 ATCRT1 RING/U-box superfamily protein (.1) AT2G39720 109 / 4e-27 RHC2A RING-H2 finger C2A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G029300 [exp] 498 / 1e-179 AT2G40830 317 / 9e-108 RING-H2 finger C1A (.1.2.3) Potri.007G074014 [exp] 148 / 1e-42 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.015G028400 [exp] 147 / 8e-42 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 145 / 2e-41 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.012G036700 [exp] 146 / 4e-41 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.002G085800 [exp] 142 / 1e-39 AT1G60360 233 / 4e-74 RING/U-box superfamily protein (.1) Potri.006G087800 [exp] 135 / 2e-37 AT5G59550 258 / 1e-83 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G243300 [exp] 124 / 7e-33 AT3G46620 239 / 8e-76 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G034800 [exp] 121 / 7e-32 AT3G46620 236 / 8e-75 zinc finger (C3HC4-type RING finger) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030755 [exp] 361 / 2e-125 AT2G40830 336 / 2e-115 RING-H2 finger C1A (.1.2.3) Lus10013235 [exp] 359 / 8e-125 AT2G40830 334 / 7e-115 RING-H2 finger C1A (.1.2.3) Lus10003698 [exp] 295 / 2e-99 AT2G40830 263 / 5e-87 RING-H2 finger C1A (.1.2.3) Lus10001582 [exp] 186 / 2e-58 AT2G40830 178 / 2e-55 RING-H2 finger C1A (.1.2.3) Lus10010179 [exp] 139 / 2e-39 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10025612 [exp] 131 / 2e-35 AT1G60360 234 / 7e-75 RING/U-box superfamily protein (.1) Lus10028063 [exp] 130 / 3e-35 AT1G60360 224 / 9e-71 RING/U-box superfamily protein (.1) Lus10040278 [exp] 128 / 3e-35 AT5G59550 224 / 2e-71 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10004712 [exp] 129 / 1e-34 AT5G59550 294 / 6e-97 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040783 [exp] 114 / 6e-30 AT5G59550 228 / 1e-72 zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain CL0167 [poplar] [flax] Zn_Beta_Ribbon PF14369 [poplar] [flax] zinc_ribbon_9 zinc-ribbon
Representative CDS sequence Show only first row Show all	>Potri.006G032100.3 pacid=42768097 polypeptide=Potri.006G032100.3.p locus=Potri.006G032100 ID=Potri.006G032100.3.v4.1 annot-version=v4.1 ATGTCAAGCAGCAGAAATACCCACTGGTGTTACAGCTGCAGGCGGCCAGTTCGACTGCGAGGGCGAGATGCAGCTTGCCCCTACTGCAGTGGAGGATTTG TCCAAGAACTTGATGATATGCATCGCATCAACCCGTTGGATTTTTTTGGAATGGACGGTGATGATGATCATGACAATATGTTTGGGCTCATGGAAGCTTT CTCAGCCTTTATGAGGCAACGAATGGCTGATAGAAGCCATAATCATGATATTAGATCTAGATCAGATTCAATTCCTGAACATAATCCAGGTTTTGGTCCT CTGTTGATCTTTGGTGGCCAAATTCCTTTTAGGTTGTCTGGAAATGGTGGGCTTGAAGCTCTCTTTTCTGGGTCTCCTGGTGTTGCCTTTGCAAGAGGTA ATGCCGGTGATTATTTTGTAGGCCCTGGACTTGAAGAATTGTTTGAACAGCTTTCTGCTAATGATCGGCGAGGCCCTGCCCCAGCAACCCGGTCATCAAT TGATGCGATGCCCACTGTTAAGATCACACAAAGGCATCTTCGCACTGATTCACACTGTCCAGTTTGCAAAGATAAATTTGAGCTGGGGTCTGAAGCAAGG CAGATGCCATGTAATCATTTATATCACTCAGATTGCATAGTTCCATGGCTAGTCCAGCACAACTCGTGCCCTGTTTGTCGGCAGGAGCTACCACCGCAAG GATCAAGCAGTGGACACAGTTATCAAAGCTCAAGCTCTCGAAGCAGAAACAGCAATTATAGTGGAAGGGAGAACAGTAGGGAAGGAAGACGCAATCCATT ATCTTATCTGTGGCCCTTCCGCTCATCCAATTCGAGTTCTAACCATGATGAGACTCCTGGAAGCAGCTCACCAACCATGCATGAAAACAACCACCAGATG GGGTATTCAGGATGGCCTTTTAACTAG
AA sequence Show only first row Show all	>Potri.006G032100.3 pacid=42768097 polypeptide=Potri.006G032100.3.p locus=Potri.006G032100 ID=Potri.006G032100.3.v4.1 annot-version=v4.1 MSSSRNTHWCYSCRRPVRLRGRDAACPYCSGGFVQELDDMHRINPLDFFGMDGDDDHDNMFGLMEAFSAFMRQRMADRSHNHDIRSRSDSIPEHNPGFGP LLIFGGQIPFRLSGNGGLEALFSGSPGVAFARGNAGDYFVGPGLEELFEQLSANDRRGPAPATRSSIDAMPTVKITQRHLRTDSHCPVCKDKFELGSEAR QMPCNHLYHSDCIVPWLVQHNSCPVCRQELPPQGSSSGHSYQSSSSRSRNSNYSGRENSREGRRNPLSYLWPFRSSNSSSNHDETPGSSSPTMHENNHQM GYSGWPFN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Potri.006G032100 [exp]	0	1	RHC1.2
AT5G41700		ATUBC8, UBC8	ARABIDOPSIS THALIANA UBIQUITIN...		Potri.006G110200 [exp]	2.44	0.8116
AT5G28640		ATGIF1, GIF1, A...	ARABIDOPSIS GRF1-INTERACTING F...		Potri.019G013100 [exp]	2.64	0.7794	Pt-GIF1.1
AT1G51200			A20/AN1-like zinc finger famil...		Potri.001G018600 [exp]	2.82	0.8006
AT1G09815		POLD4	polymerase delta 4 (.1)		Potri.019G042900 [exp]	3.16	0.7826
AT5G06240		EMB2735	embryo defective 2735 (.1)		Potri.016G074700 [exp]	4.24	0.8254
AT3G56680			Single-stranded nucleic acid b...		Potri.006G034700 [exp]	4.89	0.7811
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Potri.010G243100 [exp]	4.89	0.7552	Pt-SGJ3.2
AT3G56680			Single-stranded nucleic acid b...		Potri.016G032500 [exp]	6.00	0.8069
AT3G07500	FAR1_related		Far-red impaired responsive (F...		Potri.014G176500 [exp]	7.07	0.6989
AT4G13530			unknown protein		Potri.013G099200 [exp]	8.06	0.7472

Compare expression of checked genes

Potri.006G032100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.