Plant FIBer expression Database

Potri.006G032200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G41020 410 / 3e-140 WW domain-containing protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G170400
[exp]
44 / 0.0002 AT3G19840 631 / 0.0 pre-mRNA-processing protein 40C (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027285
[exp]
523 / 0 AT2G41020 427 / 1e-146 WW domain-containing protein (.1.2)
Lus10038992
[exp]
512 / 3e-180 AT2G41020 427 / 7e-147 WW domain-containing protein (.1.2)
Lus10033770
[exp]
43 / 0.0005 AT1G44910 682 / 0.0 pre-mRNA-processing protein 40A (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0680 WW PF00397 WW WW domain
Representative CDS sequence
>Potri.006G032200.1 pacid=42768014 polypeptide=Potri.006G032200.1.p locus=Potri.006G032200 ID=Potri.006G032200.1.v4.1 annot-version=v4.1
ATGGGAGAAAATACAGTGCCTCAAGCTTCTTACCATTCATCATCAAGTCTATATAGCAATTCAACTGACATTGATACCGCAGCTCAAGATGTACTCTTGC
GTGAACAAGAAATTGAGACACAAAGAGTCATTCAAGGCCAAAGAGATGCAGAAAGTGAAGGTGGAGCACCTTCTAAGGATAATACTGATGTTTTCGGTGA
AAGGAGAGACCCTAATGCCTTAAAGGAACATTTACTGAAGATGGCTACTGAACATCGCTCGGAAATGGCTTTGAAGCGTGGGAAGCCTGCTGGTGCTGAA
GAAGATCATGTAGAAATTGGGAACGGATACGGTGTACCAGGTGGAGGTGCATATTATGCTTCTTCAAGGCCTGGCCTCGATAGTGAGTCAGAACAGAAGT
CGGCTACAAAGGATCTCCCAGAGTTCCTGAAGCAGAAATTAAGAGCAAGGGGTCTCCTGAAGGATGATACAGTAAAAAGCCATCCATTGAGAACTGATAA
TAAGTCAGAGACTGGTTCAACACAAGCTGTTGAAATCCGGAAGTTGCCTCCTGGATGGGTGGAAGCAAAGGATCCTGCTAGTGGTGCTTCATATTATTAC
CATGGAAGCACCGGAAAGACCCAGTGGGAAAGGCCAACTGATATGCCTTCAACCACATGGACTCCATCACCTTTACCTCATTTAGAAGATTGGGTGGAGG
CATTGGACGAAACTACAGGTCATAAATATTACTACAATACGAAGACCCATGTATCACAATGGCAGCATCCAAAATCATCACAGCTAGCCTCACAACACTC
TCACATCTCATATTCTGGAAATGCTTCTAGTGGGAATCAGGACAATAGATCATCCGAGTCAAAGAAATGCATCGAATGTGGTGGGTGGGGACTCGGTGTT
GTGCAGACTTGGGGTTACTGCAATCATTGCACACGAGTTCTGAATCTACCACAATGCCAGTACATGATGCCCAATTTGAATTACCAGCAGCAGAATCTTG
CAAATTCGAAGGGTGATCTTGAAAAAAATGCTCCAAAACAGAGGCCCAATTGGAAACCTCCTGTGGGAAAAGGAAATAGAAGAGAGAGCAAAAAGCGTGC
CTACAATGATGATGATGAGTTGGACCCCATGGATCCAAGCTCTTATTCAGATGCTCCCCGTGGCGGCTGGGTTGTGGGCCTCAAAGGAGTTCAGCCTCGT
GCAGCTGATACTACTGCTACGGGTCCGCTATTTCAACAGCGACCATACCCATCACCAGGAGCTGTCTTGCGAAAGAATGCTGAGGTCGCAACACAAACCA
AGAAATCCAGCTCTCCTTACATGCCTATATCCAAGAGAGGAGATGGTAGTGATGGTCTTGGAGATGCCGACTGA
AA sequence
>Potri.006G032200.1 pacid=42768014 polypeptide=Potri.006G032200.1.p locus=Potri.006G032200 ID=Potri.006G032200.1.v4.1 annot-version=v4.1
MGENTVPQASYHSSSSLYSNSTDIDTAAQDVLLREQEIETQRVIQGQRDAESEGGAPSKDNTDVFGERRDPNALKEHLLKMATEHRSEMALKRGKPAGAE
EDHVEIGNGYGVPGGGAYYASSRPGLDSESEQKSATKDLPEFLKQKLRARGLLKDDTVKSHPLRTDNKSETGSTQAVEIRKLPPGWVEAKDPASGASYYY
HGSTGKTQWERPTDMPSTTWTPSPLPHLEDWVEALDETTGHKYYYNTKTHVSQWQHPKSSQLASQHSHISYSGNASSGNQDNRSSESKKCIECGGWGLGV
VQTWGYCNHCTRVLNLPQCQYMMPNLNYQQQNLANSKGDLEKNAPKQRPNWKPPVGKGNRRESKKRAYNDDDELDPMDPSSYSDAPRGGWVVGLKGVQPR
AADTTATGPLFQQRPYPSPGAVLRKNAEVATQTKKSSSPYMPISKRGDGSDGLGDAD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G41020 WW domain-containing protein (... Potri.006G032200
[exp]
0 1
AT5G11470 bromo-adjacent homology (BAH) ... Potri.018G036500
[exp]
4.47 0.8004
AT1G71420 Tetratricopeptide repeat (TPR)... Potri.013G098800
[exp]
7.41 0.8306
Potri.018G133300
[exp]
11.22 0.8054
AT1G80880 Tetratricopeptide repeat (TPR)... Potri.001G043500
[exp]
13.71 0.8032
AT4G08210 Pentatricopeptide repeat (PPR-... Potri.002G087400
[exp]
14.76 0.8057
AT1G08070 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSIN... Potri.005G011000
[exp]
15.55 0.7719
AT2G40720 Tetratricopeptide repeat (TPR)... Potri.013G090600
[exp]
18.76 0.7883
AT5G55600 agenet domain-containing prote... Potri.006G017400
[exp]
22.29 0.7891
AT1G12700 RPF1 RNA processing factor 1, ATP b... Potri.005G046100
[exp]
24.37 0.7573
AT5G08490 SLG1 SLOW GROWTH 1, Tetratricopepti... Potri.004G134300
[exp]
25.45 0.7897

Potri.006G032200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.