Plant FIBer expression Database

Potri.006G032300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G56880 127 / 1e-35 VQ motif-containing protein (.1)
AT2G41010 109 / 8e-29 ATCAMBP25 calmodulin (CAM)-binding protein of 25 kDa (.1)
AT4G39720 44 / 5e-05 VQ motif-containing protein (.1)
AT1G35830 43 / 0.0001 VQ motif-containing protein (.1)
AT5G65170 42 / 0.0003 VQ motif-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G029600
[exp]
284 / 1e-96 AT3G56880 125 / 4e-35 VQ motif-containing protein (.1)
Potri.002G094900
[exp]
47 / 8e-06 AT1G35830 89 / 1e-19 VQ motif-containing protein (.1)
Potri.005G166100
[exp]
47 / 9e-06 AT5G65170 94 / 8e-21 VQ motif-containing protein (.1)
Potri.001G158800
[exp]
43 / 0.0001 AT4G39720 58 / 6e-10 VQ motif-containing protein (.1)
Potri.003G075800
[exp]
42 / 0.0003 AT3G22160 54 / 8e-09 VQ motif-containing protein (.1)
Potri.005G076600
[exp]
41 / 0.0007 AT5G65170 70 / 7e-13 VQ motif-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015982
[exp]
155 / 2e-46 AT3G56880 135 / 5e-39 VQ motif-containing protein (.1)
Lus10016205
[exp]
125 / 1e-34 AT2G41010 99 / 5e-25 calmodulin (CAM)-binding protein of 25 kDa (.1)
Lus10029339
[exp]
123 / 4e-33 AT2G41010 101 / 4e-25 calmodulin (CAM)-binding protein of 25 kDa (.1)
Lus10012292
[exp]
114 / 5e-31 AT3G56880 125 / 1e-35 VQ motif-containing protein (.1)
Lus10024738
[exp]
45 / 2e-05 AT1G35830 92 / 3e-21 VQ motif-containing protein (.1)
Lus10006941
[exp]
44 / 6e-05 AT1G35830 93 / 3e-21 VQ motif-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05678 VQ VQ motif
Representative CDS sequence
>Potri.006G032300.1 pacid=42770193 polypeptide=Potri.006G032300.1.p locus=Potri.006G032300 ID=Potri.006G032300.1.v4.1 annot-version=v4.1
ATGGCATCATCAGAGAACTTGGCAAGTCTTGAACCATGGAATATGATGTTTAGGCCAAATTTTCCTGATTTTTGGCTTCCTGAAGCCTATGCTCGCGACA
CAGAAACTCTAACAAAAGCCCTTCAAAAATCCCTCTTTAACAACATAGATGACACTCCTACAGACACAAACACCGATGATAACAGCACTAACTCTCTCTC
CATGAACGAAACTTTTTCTTCAAATTCATTCAACCCGTTTACCAGCCTAATCGAGACGGCACCCCCGACTCCGACGGCCTCGAACGTTTCTGGGTCGGAC
CCAGAAACGGCTGGAGCCACCAAACGCCAGAGAAACTTGGTCCCGGGTGCTACTGGGAAGGTTTCGAAACGGAAGACACGAGCTTCCAAACGGTCTCAGA
CAACGTTTATAACAGCGGATCCGGCTAATTTTAGACAGATGGTGCAACAGGTTACCGGTGTTAGATTCGGCAACTCACAGGTTTCAATGGTTCCTGTTTT
GAAACCTGAGCCACAGAGGCCTGGTGGCCGGTTGCTAGTGGGTAGCGGGTACCTGCCCACGCTTGATACGTCGGCGTTTTTGCTTGATCATCATCAACAA
CAGTTACAACATCATGTGGTCACGGGGTCAACTTCTGGATCTAGTACCGGACCTGATTTTGGGCCTGGACCGAATCTGTTTACCCAGCCCATGGTGGGGG
ATGTTGGTGTTCATTCTAGTAGTGGTTTAGATTTCGGCACTTTCTCTAGCTTTCCCACTCTAGAGTCATGGAAGGTTGTGTGA
AA sequence
>Potri.006G032300.1 pacid=42770193 polypeptide=Potri.006G032300.1.p locus=Potri.006G032300 ID=Potri.006G032300.1.v4.1 annot-version=v4.1
MASSENLASLEPWNMMFRPNFPDFWLPEAYARDTETLTKALQKSLFNNIDDTPTDTNTDDNSTNSLSMNETFSSNSFNPFTSLIETAPPTPTASNVSGSD
PETAGATKRQRNLVPGATGKVSKRKTRASKRSQTTFITADPANFRQMVQQVTGVRFGNSQVSMVPVLKPEPQRPGGRLLVGSGYLPTLDTSAFLLDHHQQ
QLQHHVVTGSTSGSSTGPDFGPGPNLFTQPMVGDVGVHSSSGLDFGTFSSFPTLESWKVV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G56880 VQ motif-containing protein (.... Potri.006G032300
[exp]
0 1
AT3G56880 VQ motif-containing protein (.... Potri.016G029600
[exp]
1.00 0.9311
AT1G07530 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARAB... Potri.009G033300
[exp]
1.41 0.9102
AT3G16510 Calcium-dependent lipid-bindin... Potri.003G160400
[exp]
3.00 0.9033
AT3G12630 SAP5 stress associated protein 5, A... Potri.001G269400
[exp]
4.47 0.8675
AT4G37260 MYB ATMYB73 myb domain protein 73 (.1) Potri.002G122600
[exp]
7.34 0.8598
AT1G50460 ATHKL1, HKL1 hexokinase-like 1 (.1) Potri.001G254800
[exp]
14.73 0.8550
AT5G25240 unknown protein Potri.006G190100
[exp]
15.49 0.8058
AT5G02580 Plant protein 1589 of unknown ... Potri.006G213500
[exp]
20.97 0.8464
Potri.018G072101
[exp]
26.49 0.8316
AT5G51190 AP2_ERF Integrase-type DNA-binding sup... Potri.001G079800
[exp]
26.53 0.8521 ERF6

Potri.006G032300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.