Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19750 279 / 8e-94 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT2G14860 105 / 7e-27 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT5G43140 100 / 1e-24 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT4G33905 94 / 1e-22 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT4G14305 72 / 5e-15 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT2G42770 67 / 7e-13 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT3G24570 66 / 1e-12 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT4G04470 62 / 3e-11 PMP22 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT1G52870 60 / 4e-10 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT4G03410 57 / 2e-09 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G029700 [exp] 424 / 6e-151 AT5G19750 257 / 5e-85 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.001G296400 [exp] 103 / 7e-26 AT2G14860 300 / 6e-103 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.009G090600 [exp] 100 / 7e-25 AT4G33905 299 / 1e-102 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.018G081600 [exp] 74 / 3e-15 AT3G24570 309 / 7e-108 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.018G037100 [exp] 73 / 5e-15 AT3G24570 289 / 6e-100 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.011G007100 [exp] 72 / 5e-15 AT4G04470 230 / 1e-77 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.004G008700 [exp] 68 / 2e-13 AT4G04470 209 / 2e-69 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.010G032900 [exp] 62 / 3e-11 AT2G42770 271 / 9e-93 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.011G123700 [exp] 56 / 2e-08 AT1G52870 472 / 1e-167 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012098 [exp] 282 / 4e-95 AT5G19750 259 / 4e-86 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10039003 [exp] 277 / 1e-93 AT5G19750 241 / 1e-79 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10010446 [exp] 275 / 2e-92 AT5G19750 258 / 2e-86 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10027297 [exp] 243 / 5e-73 AT3G22270 694 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Lus10002118 [exp] 105 / 1e-26 AT2G14860 292 / 6e-100 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10011424 [exp] 103 / 1e-25 AT2G14860 288 / 3e-98 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10018700 [exp] 89 / 9e-20 AT5G43140 253 / 2e-83 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10034922 [exp] 81 / 6e-18 AT3G24570 330 / 4e-116 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10023648 [exp] 81 / 8e-18 AT3G24570 330 / 6e-116 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10007761 [exp] 81 / 4e-17 AT5G43140 223 / 1e-70 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04117 [poplar] [flax] Mpv17_PMP22 Mpv17 / PMP22 family
Representative CDS sequence Show only first row Show all	>Potri.006G032500.2 pacid=42767874 polypeptide=Potri.006G032500.2.p locus=Potri.006G032500 ID=Potri.006G032500.2.v4.1 annot-version=v4.1 ATGGTGCAAAACCCAGTATGTTTCACTCGCAAAGCTTCACTCTTATACCGTTTCGTAGGGTTTTCACCTAAACCCACTCCTCATTTTAGCCTAAGAACTC AGCTTTCTTTAAACCCTGCTCAGATAACTGGATTCAGGGCCTGTTCGTCTTCTTCTCCGTTTTCAAATTCTAGTCATGGAGCTGTGTTTAAGGACATGGG TGGTTCTAAAATTGGATTTAGGCAATTGGATTTTGATCAATTTCGTGTCTTGGCTGTTTCTGGTGGTGGCTCTGGTGGTTCTGGTCGGCTTGGAGGCTCT TCTGGTGGAGGAGGAGGTCAAGGTGGTGCTGCTAGTGGTGGTTCTGGCTCAGGTGGAAATAGAAACTGGTCCTTCCTTTCATGGTATTTGAATCTTCTAG CGAAGTACCCTGTGTTGACTAAAGCTGTTACTTCTGCAATATTGACTCTTATGGGGGATTTGATCTGCCAGCTTGTGATTGATCAAGCTCCATCCCTAGA CCTGAAAAGAACATTCGTATTTACTTTCTTGGGGCTGGTACTGGTGGGTCCCACGTTGCATTTCTGGTACCTATATTTGAGTAAATTGGTAACATTGCCT GGAGCATCCGGTGCATTCTTGCGCCTTTTAGTGGATCAGTTTGTATTTTCTCCTATATTCATTGGAGTCTTCTTGTCAACATTGGTGACGTTAGAGGGAA GGCCATCAGAAGTCTTACCTAAGCTTCAGCAGGAGTGGTTTTCTGCTGTTCTTGCAAATTGGCAACTTTGGATACCATTTCAGTTTCTAAACTTCCGTTT TGTCCCACAGCAATTTCAGGTTCTTGCTGCTAATGTTATCGCTTTAGTCTGGAATGTGATTCTCTCATTCAAAGCTCACAAAGAGGTTCTCCCGAAATAG
AA sequence Show only first row Show all	>Potri.006G032500.2 pacid=42767874 polypeptide=Potri.006G032500.2.p locus=Potri.006G032500 ID=Potri.006G032500.2.v4.1 annot-version=v4.1 MVQNPVCFTRKASLLYRFVGFSPKPTPHFSLRTQLSLNPAQITGFRACSSSSPFSNSSHGAVFKDMGGSKIGFRQLDFDQFRVLAVSGGGSGGSGRLGGS SGGGGGQGGAASGGSGSGGNRNWSFLSWYLNLLAKYPVLTKAVTSAILTLMGDLICQLVIDQAPSLDLKRTFVFTFLGLVLVGPTLHFWYLYLSKLVTLP GASGAFLRLLVDQFVFSPIFIGVFLSTLVTLEGRPSEVLPKLQQEWFSAVLANWQLWIPFQFLNFRFVPQQFQVLAANVIALVWNVILSFKAHKEVLPK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19750			Peroxisomal membrane 22 kDa (M...		Potri.006G032500 [exp]	0	1
AT2G40720			Tetratricopeptide repeat (TPR)...		Potri.013G090600 [exp]	2.44	0.8658
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Potri.006G045800 [exp]	3.16	0.8913
AT1G77550			tubulin-tyrosine ligases;tubul...		Potri.006G141900 [exp]	7.34	0.8238
AT5G44230			Pentatricopeptide repeat (PPR)...		Potri.005G119000 [exp]	9.38	0.8630
AT5G63110		RPD3B, CAT1, AX...	RNA-MEDIATED TRANSCRIPTIONAL S...		Potri.012G083800 [exp]	10.58	0.8410	Pt-HDA6.2,HDA909
					Potri.001G077040 [exp]	10.95	0.8370
AT3G21110		PUR7, ATPURC	PURIN C, purin 7 (.1.2)		Potri.017G051500 [exp]	13.85	0.8409
AT5G61390			Polynucleotidyl transferase, r...		Potri.015G062000 [exp]	14.96	0.8125
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.001G074400 [exp]	15.81	0.8382	ENOD8.2
AT1G09620			ATP binding;leucine-tRNA ligas...		Potri.004G226700 [exp]	16.30	0.8307

Compare expression of checked genes

Potri.006G032500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.