Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79590 238 / 2e-79 ATSYP52, SYP52 syntaxin of plants 52 (.1.2) AT1G16240 228 / 1e-75 ATSYP51, SYP51 syntaxin of plants 51 (.1.2.3) AT1G16230 145 / 2e-43 Target SNARE coiled-coil domain protein (.1) AT1G16225 99 / 2e-25 Target SNARE coiled-coil domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G030100 [exp] 342 / 1e-120 AT1G79590 265 / 3e-90 syntaxin of plants 52 (.1.2) Potri.006G032900 [exp] 328 / 6e-115 AT1G79590 249 / 1e-83 syntaxin of plants 52 (.1.2) Potri.016G030200 [exp] 312 / 8e-109 AT1G79590 246 / 9e-83 syntaxin of plants 52 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016577 [exp] 224 / 3e-74 AT1G79590 319 / 1e-111 syntaxin of plants 52 (.1.2) Lus10002446 [exp] 200 / 2e-64 AT1G16240 265 / 2e-90 syntaxin of plants 51 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05739 [poplar] [flax] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Potri.006G032800.1 pacid=42769397 polypeptide=Potri.006G032800.1.p locus=Potri.006G032800 ID=Potri.006G032800.1.v4.1 annot-version=v4.1 ATGGCAACGCCATCGGGGTCATGGATGCAAGAATTCAATGAAGCATCAAAACTTGGTGATGAAATTAATGGTATGATTAACGGGAAGAATTCTTTGCCTC CATCAGGACCAGAAACACAAAGGCATCTTTCTGCAACTAGGAGAAAGATCGCTATTTTGAGAACTAAACTTGATATTTTGCAATCCCTTTTGACAGCACT TCCTAGCAAGCAGCCAATAACAGGGAAAGAGATGAATCGGCTTCAAGACATGCTGAAAAATTTGAGCACTAAAGTTAACCAGATGGCTACTACTCTCAAT ATGTCCAGTGCTGCTAACAGAGAGAACTTGCTTGGGCCTGATAAGAAGACAGATGATGATGTAGTGAATAGAGCATCTGGCTTGGACAACCATGGTCTTG TTGGCTTTCAACGGCAAATTATGAAAGAACAAGATGAGGGCCTTGAAAAATTGGAGGAGACAGTGACAAGCACTAAACACATCGCACTGGCTGTCAACGA GGAACTTACCCTACACACTAAGCTTCTGGATGACTTAGACGAGCATGTGGATGTAACAAATTCCCGTCTACAGACTGTTCAAAGGAAACTGGCTCTTCTG AACAAACGCACTAAAGGCGGTTGCTCTTGCTTGATCTTACTGGTCATCGCCATTGTCATTCTAATTGTGGTAATCCGGGGGCTGTTTAAATATTTGTAA
AA sequence Show only first row Show all	>Potri.006G032800.1 pacid=42769397 polypeptide=Potri.006G032800.1.p locus=Potri.006G032800 ID=Potri.006G032800.1.v4.1 annot-version=v4.1 MATPSGSWMQEFNEASKLGDEINGMINGKNSLPPSGPETQRHLSATRRKIAILRTKLDILQSLLTALPSKQPITGKEMNRLQDMLKNLSTKVNQMATTLN MSSAANRENLLGPDKKTDDDVVNRASGLDNHGLVGFQRQIMKEQDEGLEKLEETVTSTKHIALAVNEELTLHTKLLDDLDEHVDVTNSRLQTVQRKLALL NKRTKGGCSCLILLVIAIVILIVVIRGLFKYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79590		ATSYP52, SYP52	syntaxin of plants 52 (.1.2)		Potri.006G032800 [exp]	0	1
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.016G066400 [exp]	1.41	0.8919
AT1G14560			Mitochondrial substrate carrie...		Potri.006G226300 [exp]	2.64	0.8676
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Potri.012G096700 [exp]	3.16	0.8837
AT1G04260		PRA1.D, MPIP7, ...	PRENYLATED RAB ACCEPTOR 1.D, C...		Potri.010G077700 [exp]	3.46	0.8581	Pt-MPI7.1
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Potri.003G045200 [exp]	3.46	0.8814	IAR3.1
AT5G48655			RING/U-box superfamily protein...		Potri.014G191400 [exp]	3.87	0.8554
AT3G10260			Reticulon family protein (.1.2...		Potri.002G055600 [exp]	4.24	0.8639
AT5G59830			unknown protein		Potri.009G027800 [exp]	5.47	0.8770
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.002G056500 [exp]	6.48	0.8822
AT2G43320			S-adenosyl-L-methionine-depend...		Potri.017G031700 [exp]	8.48	0.8655

Compare expression of checked genes

Potri.006G032800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.