Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	C3H1,CYP98.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40890 897 / 0 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT1G74550 525 / 0 CYP98A9 cytochrome P450, family 98, subfamily A, polypeptide 9 (.1) AT1G74540 508 / 2e-177 CYP98A8 cytochrome P450, family 98, subfamily A, polypeptide 8 (.1) AT5G07990 327 / 2e-106 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G45550 313 / 6e-101 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT5G25140 310 / 6e-100 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT3G26310 305 / 7e-98 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT2G45560 305 / 9e-98 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT3G26300 303 / 2e-97 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT4G37430 303 / 3e-97 CYP81F1, CYP91A2 "cytochrome P450, family 91, subfamily A, polypeptide 2", CYTOCHROME P450 MONOOXYGENASE 81F1, cytochrome P450, family 91, subfamily A, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G031100 [exp] 892 / 0 AT2G40890 796 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.016G031000 [exp] 870 / 0 AT2G40890 776 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.001G167900 [exp] 374 / 1e-124 AT5G07990 369 / 1e-122 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G167800 [exp] 363 / 1e-120 AT5G07990 353 / 2e-116 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066400 [exp] 359 / 1e-118 AT5G07990 385 / 9e-129 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066600 [exp] 357 / 2e-118 AT5G07990 382 / 1e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066800 [exp] 354 / 5e-117 AT5G07990 379 / 2e-126 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G040200 [exp] 351 / 1e-115 AT5G07990 389 / 2e-130 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.018G051300 [exp] 341 / 7e-112 AT5G07990 379 / 9e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033524 [exp] 912 / 0 AT2G40890 866 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10020847 [exp] 907 / 0 AT2G40890 859 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10020850 [exp] 694 / 0 AT2G40890 666 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10033522 [exp] 605 / 0 AT1G79540 663 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013150 [exp] 367 / 1e-121 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10008112 [exp] 346 / 1e-113 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10017742 [exp] 341 / 1e-111 AT5G07990 400 / 9e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10017961 [exp] 333 / 2e-108 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10021158 [exp] 320 / 1e-103 AT5G07990 706 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10019457 [exp] 314 / 1e-101 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.006G033300.1 pacid=42770021 polypeptide=Potri.006G033300.1.p locus=Potri.006G033300 ID=Potri.006G033300.1.v4.1 annot-version=v4.1 ATGAATCTCCTTCTGATTCCGATATCCTTCATCACCCTTCTCTTGACATACAAAATCTACCAACGTCTACGCTTCAAGCTCCCACCAGGGCCAAGACCAT GGCCAATAGTAGGCAACCTTTATGACGTCAAGCCTGTGAGGTTCCGGTGCTTTGCAGAGTGGGCTCAGGCATATGGTCCTATCATCTCAGTTTGGTTCGG TTCAACTCTTAACGTGATTGTTTCCAATACAGAATTGGCAAAGGAAGTGCTCAAGGAAAATGATCAACAGTTAGCTGATAGACATAGGAGTCGATCAGCT GCCAAGTTTAGCAGAGACGGTAAAGACCTTATATGGGCTGATTATGGACCTCACTATGTTAAGGTTCGAAAGGTTTGCACCCTTGAGCTTTTCTCTCCCA AAAGACTTGAAGCTTTGAGGCCTATCAGAGAAGATGAGGTTGCTGCCATGGTTGAATCAATTTTCAATGACTGCACTAATCCTGAAAACAATGGAAAAAC CTTGACGGTGAAGAAATATTTGGGGGCAGTTGCATTCAACAACATTACAAGGCTAGCATTTGGGAAGCGATTCGTGAATGCCGAAGGCGTTATGGATGAG CAAGGGCTAGAATTCAAGGCAATTGTATCCAATGGACTTAAGTTGGGTGCATCACTTGCAATGGCAGAGCACATTCCATGGCTTCGTTGGATGTTTCCGT TAGAGGAAGATGCATTTGCCAAGCATGGGGCTCGTCGGGACCGACTCACTAGAGCTATTATGGATGAACATACCCTTGCCCGGCAGACGAGTGGCGGTGC CAAGCAGCATTTTGTTGATGCATTGCTTACATTGAAGGAGAAGTATGACCTTAGTGAAGACACAATCATTGGACTGCTTTGGGACATGATTACTGCGGGC ATGGACACAACTGCAATCTCAGTAGAATGGGCAATGGCAGAGCTAATCAAGAACCCAAGGGTGCAACAGAAGGCTCAGGAAGAGTTGGACAGTGTTGTTG GATTTGAACGTGTCATGACCGAGGCTGATTTCTCAGGCCTTCCTTACTTACAATGTGTAGCCAAGGAGGCGCTAAGGTTGCACCCCCCAACACCACTTAT GCTCCCGCACCGTGCCAATGCCAATGTGAAAGTTGGTGGCTACGACATTCCTAAGGGATCAAATGTTCACGTCAATGTATGGGCCGTAGCTCGCGATCCG GCCACCTGGAAGAAACCCTTAGAGTTCCGGCCAGAGAGGTTCCTGGAGGAGGATGTTGACATGAAGGGTCATGATTTCAGGCTACTTCCATTTGGTGCAG GAAGGAGAGTGTGCCCTGGTGCACAACTTGGTATCAATTTGGTCACATCCATGCTGGGTCACTTGCTGCACCATTTTTGTTGGACCCCTCCTGAAGGAAT GAAGCCAGAGGAAATTGACATGTCGGAAAATCCTGGGCTTGTCACTTACATGAGGACTCCATTACAAGCAGTGGCCACTCCTCGGTTGCCTTCACATTTG TACAAACGTGTTGCTGTTGATATTTAA
AA sequence Show only first row Show all	>Potri.006G033300.1 pacid=42770021 polypeptide=Potri.006G033300.1.p locus=Potri.006G033300 ID=Potri.006G033300.1.v4.1 annot-version=v4.1 MNLLLIPISFITLLLTYKIYQRLRFKLPPGPRPWPIVGNLYDVKPVRFRCFAEWAQAYGPIISVWFGSTLNVIVSNTELAKEVLKENDQQLADRHRSRSA AKFSRDGKDLIWADYGPHYVKVRKVCTLELFSPKRLEALRPIREDEVAAMVESIFNDCTNPENNGKTLTVKKYLGAVAFNNITRLAFGKRFVNAEGVMDE QGLEFKAIVSNGLKLGASLAMAEHIPWLRWMFPLEEDAFAKHGARRDRLTRAIMDEHTLARQTSGGAKQHFVDALLTLKEKYDLSEDTIIGLLWDMITAG MDTTAISVEWAMAELIKNPRVQQKAQEELDSVVGFERVMTEADFSGLPYLQCVAKEALRLHPPTPLMLPHRANANVKVGGYDIPKGSNVHVNVWAVARDP ATWKKPLEFRPERFLEEDVDMKGHDFRLLPFGAGRRVCPGAQLGINLVTSMLGHLLHHFCWTPPEGMKPEEIDMSENPGLVTYMRTPLQAVATPRLPSHL YKRVAVDI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Potri.006G033300 [exp]	0	1	C3H1,CYP98.1
AT5G17420		ATCESA7, MUR10,...	MURUS 10, IRREGULAR XYLEM 3, C...		Potri.018G103900 [exp]	1.00	0.9682
AT3G27960			Tetratricopeptide repeat (TPR)...		Potri.008G094700 [exp]	2.44	0.9586
AT5G03300		ADK2	adenosine kinase 2 (.1)		Potri.008G038100 [exp]	2.44	0.9443
AT3G61750			Cytochrome b561/ferric reducta...		Potri.014G098700 [exp]	3.00	0.9551
AT4G27880			Protein with RING/U-box and TR...		Potri.012G015500 [exp]	4.47	0.9387	SINAT4.2
AT5G50420			O-fucosyltransferase family pr...		Potri.003G073500 [exp]	5.19	0.9393	FUT13.1
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Potri.009G099800 [exp]	5.91	0.9422	CAM1
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Potri.002G257900 [exp]	6.00	0.9461
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Potri.013G004100 [exp]	6.48	0.9103	AdoMet_e2,Pt-SAMS.1
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Potri.008G201600 [exp]	7.07	0.9273

Compare expression of checked genes

Potri.006G033300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.