Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48570 595 / 0 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G25230 585 / 0 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT3G54010 211 / 8e-61 DEI1, PAS1 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) AT1G58450 132 / 4e-36 TPR6 tetratricopeptide repeat 6, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G21640 104 / 3e-24 FKBP42, UCU2, TWD1, ATFKBP42 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G48580 96 / 4e-23 FKBP15-2 FK506- and rapamycin-binding protein 15 kD-2 (.1) AT3G55520 89 / 2e-20 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G25220 87 / 4e-20 FKBP15-1 FK506-binding protein 15 kD-1 (.1) AT5G64350 79 / 9e-18 FKP12, ATFKBP12, FKBP12 ARABIDOPSIS THALIANA FK506-BINDING PROTEIN 12, FK506-binding protein 12 (.1) AT4G25340 79 / 1e-15 ATFKBP53 FK506 BINDING PROTEIN 53 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G248300 [exp] 613 / 0 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Potri.014G149400 [exp] 605 / 0 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G117200 [exp] 498 / 1e-171 AT5G48570 553 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.016G105100 [exp] 218 / 2e-63 AT3G54010 825 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Potri.009G059200 [exp] 101 / 3e-23 AT3G21640 548 / 0.0 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G264400 [exp] 97 / 1e-21 AT3G21640 556 / 0.0 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G248200 [exp] 91 / 2e-21 AT5G48580 228 / 1e-77 FK506- and rapamycin-binding protein 15 kD-2 (.1) Potri.008G057900 [exp] 88 / 6e-20 AT3G55520 236 / 7e-80 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.010G201600 [exp] 88 / 7e-20 AT3G55520 219 / 2e-73 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003171 [exp] 602 / 0 AT3G25230 871 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10002338 [exp] 582 / 0 AT3G25230 874 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10025888 [exp] 560 / 0 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10038216 [exp] 559 / 0 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10022603 [exp] 206 / 7e-59 AT3G54010 831 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Lus10021502 [exp] 191 / 5e-53 AT3G54010 847 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Lus10025889 [exp] 94 / 2e-22 AT5G48580 196 / 1e-65 FK506- and rapamycin-binding protein 15 kD-2 (.1) Lus10003170 [exp] 94 / 3e-22 AT3G25220 226 / 4e-77 FK506-binding protein 15 kD-1 (.1) Lus10002339 [exp] 93 / 5e-22 AT3G25220 227 / 1e-77 FK506-binding protein 15 kD-1 (.1) Lus10038215 [exp] 94 / 3e-20 AT3G25210 368 / 4e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [poplar] [flax] FKBP PF00254 [poplar] [flax] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.006G033400.1 pacid=42769186 polypeptide=Potri.006G033400.1.p locus=Potri.006G033400 ID=Potri.006G033400.1.v4.1 annot-version=v4.1 ATGGAACACTTGTCCTTGAGTTCCTCTTTGCAAAATGAAATCCAAACCGATAATTCGGGATTGCCCGAGAAAAAAATCGGAAGCCAAGGGCTAAGGAAAA AGATTGTGAAGAAGGGAAACTCATGGCAAACTCCATTTCCTGGAGATGAAGTGGAAGTTCATTTCAATGGATATATCGAAGGGGGGGCAAGTCTTGAGTC AAGTCGTGATAAAGGGGTTCCCTTTAAGTTCAAATTAGGCCAGGGAGAAGTAATCAAAGGATGGGATGAAGGGGTTGCCACCATGAAGAATGGAGAAAGA GCAATTTTTACGGTACCGCCAAACTTGGCCTACGGGGAGGCTGGTTCTCCACCACTGATTCCTCCCAATGCAACTCTTGTTTTTGATGTTGAGATGCTGT CTTGGAGTAGCATCAGGGATTTAACAGGCGATGGAGGAATATTGAAGAAGCTAATAAAGGAGGGTGAAGGATGGGCTACACCAAGAGATGGAGATGAAGT TTTAGTGAAGTATGAGGCAAGGATTGAGACTGGAATGCTTGTCTCCAAATCCGAGGAAGGTGTTGAGTTTCATGTAGGAGATGGATATCTATGTCCTGCC TTGAGCAGAGCAGTGAAGACAATGAGAAAGGGTGAGAAAGCAGAGCTAGCAGTAAAACTTTCTTACGGCTTCATTGAGAAAGGAAATTTAGCTCCTGACA TTGAAAGTAACATTCCACCTTATTCTAATTTAACCATCCAACTTGAGCTTGTATCCTGGAGAAGTGTCACCGATGTCACCGGAGATAAGAAGGTCCTTAA AAAAATTGTAAAAGCCGGTGAAGGATTCGATCGTCCGACCGAGGGATCCCATGTGAAAGTGACATATGTTGGAAAACTTGAAGATGGAACAGTTTTTGAC AGGAAAGGGACTAATGGAGAGCCATTTGAATTCATAACTTTGGAAGAACAAGTAAATGAGGGTCTAGACAGGGCCATTATGACTATGAAGAAAGGAGAGC ATGCCACAGTGACCGTGGATGCCAAATATCTCCATGGCCATGACATTTCAGGAATGCTTCCTGCAAATTCCATGCTTCATTATGAAGTTGAGCTGCTTGA TTTTATTAAGGAGAAACCATTCTGGAAAATGGATACACATGAGAAACTAGAAGCAAGTGAAAGGAAGAAGCTAGATGGCAATGTGCTATTCAAGGCAGGA AAATTCTGGCGTGCCTCTAAGAAATACGAGAAGGCTGCAAAATACATCGAGTTCGACCACTCTTTCACTGATGAGGAAATGTGCCTGGCAAAAAGCTTGA GGCTATCATGTTACCTGAATAACGCAGCTTGTAAGCTTAAATCAGGGGAGTTCCTTGAAGCTTCAAGGCTATGCACGAAGGTTTTAGAACTTGATCCACT CAATGTCAAAGCTCTATTCAGACGATCGCAAGCATACTTGAAAACATCTGAATTAGAGAAAGCTGAGGCAGATATAAAGAAAGCTCTAGCCATTGATCCA AATAATAGAGAAGTGAAACTTGGGTTCAAGGAGCTTAAAGACAAGCAAAGAGAGTATGAGAAATATCAAGCTGAGCTTTTCAGCACCATGGTTTCAAGGA TGGGTTGA
AA sequence Show only first row Show all	>Potri.006G033400.1 pacid=42769186 polypeptide=Potri.006G033400.1.p locus=Potri.006G033400 ID=Potri.006G033400.1.v4.1 annot-version=v4.1 MEHLSLSSSLQNEIQTDNSGLPEKKIGSQGLRKKIVKKGNSWQTPFPGDEVEVHFNGYIEGGASLESSRDKGVPFKFKLGQGEVIKGWDEGVATMKNGER AIFTVPPNLAYGEAGSPPLIPPNATLVFDVEMLSWSSIRDLTGDGGILKKLIKEGEGWATPRDGDEVLVKYEARIETGMLVSKSEEGVEFHVGDGYLCPA LSRAVKTMRKGEKAELAVKLSYGFIEKGNLAPDIESNIPPYSNLTIQLELVSWRSVTDVTGDKKVLKKIVKAGEGFDRPTEGSHVKVTYVGKLEDGTVFD RKGTNGEPFEFITLEEQVNEGLDRAIMTMKKGEHATVTVDAKYLHGHDISGMLPANSMLHYEVELLDFIKEKPFWKMDTHEKLEASERKKLDGNVLFKAG KFWRASKKYEKAAKYIEFDHSFTDEEMCLAKSLRLSCYLNNAACKLKSGEFLEASRLCTKVLELDPLNVKALFRRSQAYLKTSELEKAEADIKKALAIDP NNREVKLGFKELKDKQREYEKYQAELFSTMVSRMG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48570		ROF2, ATFKBP65	FKBP-type peptidyl-prolyl cis-...		Potri.006G033400 [exp]	0	1
AT3G57810			Cysteine proteinases superfami...		Potri.016G050900 [exp]	1.41	0.7695
AT1G06650			2-oxoglutarate (2OG) and Fe(II...		Potri.010G073100 [exp]	2.82	0.7555
AT2G11890			adenylate cyclases (.1.2)		Potri.003G198200 [exp]	3.46	0.7575
AT5G66550			Maf-like protein (.1)		Potri.007G025000 [exp]	5.29	0.7082
AT4G17380		MSH4, ATMSH4	ARABIDOPSIS MUTS HOMOLOG 4, M...		Potri.003G078601 [exp]	6.92	0.7216
AT2G34090		MEE18	maternal effect embryo arrest ...		Potri.011G065000 [exp]	12.32	0.6622
AT3G52060			Core-2/I-branching beta-1,6-N-...		Potri.008G018600 [exp]	13.96	0.6907
AT1G01200		ATRAB-A3, AtRAB...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.002G175700 [exp]	24.61	0.6745
AT5G10560			Glycosyl hydrolase family prot...		Potri.001G089100 [exp]	29.49	0.7183
					Potri.002G093800 [exp]	30.24	0.6943

Compare expression of checked genes

Potri.006G033400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.