Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07050 474 / 3e-167 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 397 / 9e-137 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G56620 380 / 2e-130 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 346 / 4e-117 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 330 / 5e-111 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08300 326 / 2e-109 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 320 / 5e-107 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 317 / 6e-106 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 313 / 3e-104 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G13670 279 / 6e-91 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G031400 [exp] 687 / 0 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192500 [exp] 532 / 0 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032500 [exp] 525 / 0 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 355 / 2e-120 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 346 / 2e-117 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.010G209200 [exp] 338 / 7e-114 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176200 [exp] 336 / 3e-113 AT4G08300 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 335 / 7e-113 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G082700 [exp] 323 / 1e-108 AT2G37460 488 / 4e-174 nodulin MtN21 /EamA-like transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026112 [exp] 515 / 0 AT5G07050 555 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 513 / 0 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041634 [exp] 502 / 5e-178 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008706 [exp] 491 / 6e-174 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026113 [exp] 489 / 4e-173 AT5G07050 537 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10003738 [exp] 337 / 1e-113 AT4G08300 453 / 6e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10024424 [exp] 337 / 3e-113 AT2G37460 486 / 2e-172 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10028030 [exp] 334 / 2e-112 AT4G08300 455 / 8e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023432 [exp] 328 / 3e-110 AT2G39510 480 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040311 [exp] 328 / 5e-110 AT2G39510 482 / 2e-171 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF00892 [poplar] [flax] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Potri.006G033500.1 pacid=42769171 polypeptide=Potri.006G033500.1.p locus=Potri.006G033500 ID=Potri.006G033500.1.v4.1 annot-version=v4.1 ATGGAGGGGAATGGTTGTTTAGGAAGTTATTTTCAAAGATGCAAGCCTTATATAGCCATGATATCTTTGCAATTTGGCTATGCTGGCATGAACATCATCA CCAAGGTTTCTCTTAATCGAGGGATGAGTCATTATGTGCTAGTGGTCTATAGGCATGCCTTTGCTACTGCTGTTATTGCTCCTTTTGCTATTATTCTTGA GAGGAAAGTACGGCCAAAGATTACATTTCCCATTTTCATGCAAATGTTTGTGCTTGGTCTTCTTGGGCCTGTGATTGATCAAAACTTTTACTATGCTGGG CTGAAATTCACTTCTCCCACCTTTTCTTGTGCCATGAGTAACATGCTGCCTGCGATGACATTTGTCATGGCAGTTCTTTGCAGGATGGAGATCGTGGACA TAAAGAAAGTTAGATGCCAAGCAAAGGTGATTGGAACCATAGTAACCGTGGCTGGAGCCATGTTCATGACATTGTACAAAGGTCAGGCTATCAATTTGAT GTGGTCTAAGCATGTCAACACTCAGACATCTTCTGCTACTGCCACAACTGGATCAGCTGACAAAGATTGGCTTATGGGTTCCATTCTCCTCATCATCGCT ACACTTGCCTGGGCATCATTCTTCATTCTTCAGGCAGTGACACTTAGGAGGTACTCAGCTCAGCTTTCTCTTACAACCATTGTGTGCTTTTTGGGTACTC TACAGTCCATAGCTGTCACTTTTGTGATGGAACACAAACCTTCTGCTTGGACCATTGGCTGGGACATGAATCTTCTTGCTGCTGCCTATGCTGGAATTGT GTCGTCAAGCATTGCATACTATGTTCAAGGACTTGTCATGCAAAAACGAGGGCCTGTCTTTGTCACTGCTTTTAGTCCTTTGATGATGATCATAGTTGCA ATCATGGGCTCTTTCATCTTGGCTGAGAACATTTATGTTGGAGGTATTCTTGGTGCTATATTAATCGTAGCTGGACTCTATGCGGTTCTATGGGGCAAGT ACAAGGAACACAAAGAAAAAGAAGCAGAAACGATCCCTGAACCAATCAAAGAGAATGGAGAGAATGGTCACACAGCAGGAATGATCCAGGATATTGAAGC TAACAATGACATTGAGAGGCAAAGAAATCAAGCTAACAATGTGACCTTGCAAGCCCTGGCTATTACTCTTCCAATTTCACAGGCTCCCATGATAGCCAAG GAAGCACCAAGAGCTTAA
AA sequence Show only first row Show all	>Potri.006G033500.1 pacid=42769171 polypeptide=Potri.006G033500.1.p locus=Potri.006G033500 ID=Potri.006G033500.1.v4.1 annot-version=v4.1 MEGNGCLGSYFQRCKPYIAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAIILERKVRPKITFPIFMQMFVLGLLGPVIDQNFYYAG LKFTSPTFSCAMSNMLPAMTFVMAVLCRMEIVDIKKVRCQAKVIGTIVTVAGAMFMTLYKGQAINLMWSKHVNTQTSSATATTGSADKDWLMGSILLIIA TLAWASFFILQAVTLRRYSAQLSLTTIVCFLGTLQSIAVTFVMEHKPSAWTIGWDMNLLAAAYAGIVSSSIAYYVQGLVMQKRGPVFVTAFSPLMMIIVA IMGSFILAENIYVGGILGAILIVAGLYAVLWGKYKEHKEKEAETIPEPIKENGENGHTAGMIQDIEANNDIERQRNQANNVTLQALAITLPISQAPMIAK EAPRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.006G033500 [exp]	0	1
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Potri.003G087700 [exp]	2.82	0.8646	PtpRR10
					Potri.019G129350 [exp]	3.46	0.8580
					Potri.007G020732 [exp]	5.74	0.8574
AT5G53420			CCT motif family protein (.1.2...		Potri.015G014000 [exp]	6.48	0.8409
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G044900 [exp]	9.16	0.8447
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.007G050000 [exp]	9.59	0.8458
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G045300 [exp]	9.74	0.8449
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Potri.002G149600 [exp]	10.24	0.7946
AT3G08860		PYD4	PYRIMIDINE 4 (.1)		Potri.006G106800 [exp]	11.13	0.7489
					Potri.002G049650 [exp]	11.40	0.7860

Compare expression of checked genes

Potri.006G033500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.