Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56630 576 / 0 CYP94D2 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) AT1G34540 556 / 0 CYP94D1 "cytochrome P450, family 94, subfamily D, polypeptide 1", cytochrome P450, family 94, subfamily D, polypeptide 1 (.1) AT3G48520 361 / 6e-120 CYP94B3 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) AT5G23190 359 / 2e-118 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT3G01900 355 / 1e-117 CYP94B2 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) AT2G27690 350 / 6e-116 CYP94C1 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) AT2G45970 343 / 1e-112 CYP86A8, LCR LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) AT1G63710 342 / 2e-112 CYP86A7 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) AT5G63450 339 / 3e-111 CYP94B1 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) AT4G00360 340 / 4e-111 ATT1, CYP86A2 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G031700 [exp] 747 / 0 AT3G56630 629 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.016G031800 [exp] 464 / 2e-162 AT3G56630 402 / 1e-138 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.002G042200 [exp] 390 / 2e-131 AT5G63450 442 / 3e-151 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Potri.005G220700 [exp] 388 / 2e-130 AT3G48520 436 / 4e-149 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.002G042100 [exp] 386 / 2e-129 AT3G48520 451 / 1e-154 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.009G145400 [exp] 381 / 7e-128 AT2G27690 622 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.005G220900 [exp] 382 / 8e-128 AT3G48520 414 / 2e-140 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.010G236700 [exp] 374 / 5e-125 AT2G27690 576 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.012G096800 [exp] 373 / 1e-124 AT3G48520 611 / 0.0 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014741 [exp] 368 / 1e-122 AT5G63450 461 / 1e-158 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10014742 [exp] 368 / 2e-122 AT5G63450 451 / 8e-155 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10033853 [exp] 360 / 1e-119 AT5G63450 474 / 7e-164 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10036024 [exp] 352 / 9e-116 AT3G56630 380 / 3e-127 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Lus10033852 [exp] 348 / 2e-114 AT5G63450 457 / 4e-157 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10018217 [exp] 342 / 4e-112 AT5G58860 802 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10017394 [exp] 342 / 2e-111 AT5G23190 739 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10010193 [exp] 340 / 4e-111 AT5G23190 741 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10040687 [exp] 337 / 2e-110 AT5G58860 803 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10040986 [exp] 338 / 4e-110 AT5G23190 751 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.006G033600.1 pacid=42770346 polypeptide=Potri.006G033600.1.p locus=Potri.006G033600 ID=Potri.006G033600.1.v4.1 annot-version=v4.1 ATGGAAGTCTTATCAGTTCAACTTCTTATAATACTCTTCCTTCTTTCCCTTTGGATCTACCTCTACGTTACCACCTCTTCACAAAAGAAATCCACCAACA AGGGCTTCAAAATTTACCCTATAGTAGGGGTCTTACCGGAATTCATAAAAAACCGTGCCCGTGTTCATGACTGGTTCACTGAAACCCTCAGCCATTGCCC CGGAAACACTGATGTCCTTCGCCTTCCTGGCATAGAACCTGGTATAATCACTGCCAACCCTTTGAATGTTGAATACTTTCTCAAGACCAACTTCGAGAAC TACCCGAAAGGGGAACTGCTTATTACCACGCTTGAAGACTTCCTTGGCCGAGGAATCTTTAACTCGAATGGTGAGCTATGGAGGGTCCAAAGAAAGACTG CTAGCTATGTGTTCAACACAAAGTCACTTCGAAGTTTTGTCATGGATAACGTGGTGGTTGAAATTTCGACGAGGTTAGTTCCAATTCTTGCAAAAGCCTC GGAAACAAGACAAGTACTGGATTTGCAAGACATGTTGGAGAGATTCGCATTTGATAACATTTGTAAAGTGGCTTTTAATGTTGATCCTGCTGGTCTTGGC GGCGATAGAACTGACGGCAGTGAATTTATGCAAGCATTTGACGATGCTGCCGCACTTAGTACAGAGAGATTCCTGTGCTCTCTTCCACTTCTTTGGAAAT TCTACAAGTTTTTCGACATTGGGTCCGAGAGAAAATTGAAAAAATCAATTAAAATTGTCCATGAATTCGCCGACAATATCATACAGTCTAGAATGGAACA AAAGATGGAAAAAAAAGATGAAGATTTACTATCCCGGTTTATAGGAAATGATGAGAACTCGAATGAATTTCTCCGAGATATTGTCATAAGCTTCATTCTT GCAGGGCGAGACACAACATCTTCAGCTTTGAGTTGGTTCTTTTGGCTATTATCATTAAACCCGGATGTGGAAAGTAACATATTAAAGGAGCTTGAAACAA TACGGTCACGCAACCGCAGAAAGATCGGCGACGCTTACAGTTTTGAGGAGCTCCGAGACATGCATTATTTGCACGCAACAATATCAGAGACATTAAGATT GTATCCACCAGTACCAGTGGATATCTTGGCTTGCAGAAGTGATGATGTATTGCCGGATGGTGCATTTGTCGGAAGAAAATGGTTTGTAGTATACTGTGCT TATGCCATGGGAAGAATGGAGAGTATATGGGGCAAGAGCTGCCTAGAGTTTCTGCCTGAAAGATGGCTAGAGAATGGAATATATAGGCAAGAGAGTCCAT TCAAGTTTCCGGTATTCCATGCCGGACCAAGAATGTGTCTCGGGAAACATATGGCTTATATTCAGATGAAATCAATAGCAGCATCAGTGATTGAGCGGTT TAAGATTGATGTACAAAATAAAGACAAGTGTCCCGAGCATGTCTTGTCTTTAACACTTAGGATGAAGTCTGGGTTGCAGGTTAGGGTGAAGGAAAGATGA
AA sequence Show only first row Show all	>Potri.006G033600.1 pacid=42770346 polypeptide=Potri.006G033600.1.p locus=Potri.006G033600 ID=Potri.006G033600.1.v4.1 annot-version=v4.1 MEVLSVQLLIILFLLSLWIYLYVTTSSQKKSTNKGFKIYPIVGVLPEFIKNRARVHDWFTETLSHCPGNTDVLRLPGIEPGIITANPLNVEYFLKTNFEN YPKGELLITTLEDFLGRGIFNSNGELWRVQRKTASYVFNTKSLRSFVMDNVVVEISTRLVPILAKASETRQVLDLQDMLERFAFDNICKVAFNVDPAGLG GDRTDGSEFMQAFDDAAALSTERFLCSLPLLWKFYKFFDIGSERKLKKSIKIVHEFADNIIQSRMEQKMEKKDEDLLSRFIGNDENSNEFLRDIVISFIL AGRDTTSSALSWFFWLLSLNPDVESNILKELETIRSRNRRKIGDAYSFEELRDMHYLHATISETLRLYPPVPVDILACRSDDVLPDGAFVGRKWFVVYCA YAMGRMESIWGKSCLEFLPERWLENGIYRQESPFKFPVFHAGPRMCLGKHMAYIQMKSIAASVIERFKIDVQNKDKCPEHVLSLTLRMKSGLQVRVKER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56630		CYP94D2	"cytochrome P450, family 94, s...		Potri.006G033600 [exp]	0	1
AT2G34610			unknown protein		Potri.011G083600 [exp]	3.16	0.7494
AT2G30300			Major facilitator superfamily ...		Potri.013G084000 [exp]	10.95	0.6200
AT1G43760			DNAse I-like superfamily prote...		Potri.002G209244 [exp]	16.43	0.5959
AT4G21020			Late embryogenesis abundant pr...		Potri.004G046000 [exp]	20.14	0.6703	Pt-PM32.1
AT1G67856			RING/U-box superfamily protein...		Potri.008G185800 [exp]	47.01	0.6495
AT1G66180			Eukaryotic aspartyl protease f...		Potri.004G085000 [exp]	54.69	0.6186
AT1G71950			Proteinase inhibitor, propepti...		Potri.013G112800 [exp]	56.49	0.6444
AT5G26594		ARR24	response regulator 24 (.1)		Potri.002G253000 [exp]	84.03	0.6083
					Potri.004G067750 [exp]	86.58	0.5843
AT5G50720		ATHVA22E	ARABIDOPSIS THALIANA HVA22 HOM...		Potri.012G101600 [exp]	99.34	0.5947

Compare expression of checked genes

Potri.006G033600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.