Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-UBP5.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40930 1231 / 0 PDE323, ATUBP5, UBP5 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) AT4G10570 812 / 0 UBP9 ubiquitin-specific protease 9 (.1) AT4G10590 812 / 0 UBP10 ubiquitin-specific protease 10 (.1.2) AT1G32850 764 / 0 UBP11 ubiquitin-specific protease 11 (.1) AT5G22030 660 / 0 UBP8 ubiquitin-specific protease 8 (.1.2) AT5G46740 92 / 8e-19 UBP21 ubiquitin-specific protease 21 (.1) AT5G10790 90 / 2e-18 UBP22 ubiquitin-specific protease 22 (.1) AT2G32780 91 / 3e-18 ATUBP1 ubiquitin-specific protease 1 (.1) AT4G31670 88 / 1e-17 UBP18 ubiquitin-specific protease 18 (.1) AT5G65450 86 / 4e-17 UBP17 ubiquitin-specific protease 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G031900 [exp] 1684 / 0 AT2G40930 1204 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.001G449000 [exp] 846 / 0 AT4G10570 1097 / 0.0 ubiquitin-specific protease 9 (.1) Potri.011G152500 [exp] 835 / 0 AT4G10570 1106 / 0.0 ubiquitin-specific protease 9 (.1) Potri.001G214800 [exp] 735 / 0 AT5G22030 1086 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.006G201100 [exp] 659 / 0 AT5G22030 815 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.016G067400 [exp] 161 / 8e-43 AT4G10590 239 / 1e-70 ubiquitin-specific protease 10 (.1.2) Potri.018G017000 [exp] 97 / 2e-20 AT5G10790 615 / 0.0 ubiquitin-specific protease 22 (.1) Potri.017G055600 [exp] 95 / 1e-19 AT1G04860 524 / 1e-170 ubiquitin-specific protease 2 (.1) Potri.018G123200 [exp] 94 / 1e-19 AT5G10790 465 / 2e-158 ubiquitin-specific protease 22 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027289 [exp] 1372 / 0 AT2G40930 1239 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10038994 [exp] 1310 / 0 AT2G40930 1188 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10033243 [exp] 815 / 0 AT4G10570 1028 / 0.0 ubiquitin-specific protease 9 (.1) Lus10017343 [exp] 806 / 0 AT4G10570 1047 / 0.0 ubiquitin-specific protease 9 (.1) Lus10001661 [exp] 793 / 0 AT4G10570 1032 / 0.0 ubiquitin-specific protease 9 (.1) Lus10013369 [exp] 717 / 0 AT5G22030 1065 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10008452 [exp] 689 / 0 AT5G22030 1028 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10021253 [exp] 637 / 0 AT5G22030 814 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10013599 [exp] 628 / 0 AT5G22030 811 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10008276 [exp] 559 / 0 AT4G10570 702 / 0.0 ubiquitin-specific protease 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06337 [poplar] [flax] DUSP DUSP domain CL0125 [poplar] [flax] Peptidase_CA PF13423 [poplar] [flax] UCH_1 Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Potri.006G033800.2 pacid=42766946 polypeptide=Potri.006G033800.2.p locus=Potri.006G033800 ID=Potri.006G033800.2.v4.1 annot-version=v4.1 ATGAAGGAGTTGACGGTGGAGTGCAACAATAGTTGCGGCGGGCCACAGCGGACACCAGAAGAAGAGAGGGTTTTGATTAGAGACATTGCAATTACTTCAG AAAATAATAGTAAAGAAGGCGATAGCTTTTATTTAATCACTCAACGATGGTGGCAACATTGGATTGATTATGTGAACCAAGAACAAACGAATGTTACTAA TGATGGGTCATCTATGTTAGAGAATTGTGACGCGGTTAGTTCTTCAAGAAGGCCTGCTAGTATTGATAATTCTGACTTGATACATGACGCAAATTCTGAG GAGTCAAATGTTGGCTTTGAGATTCATGATACTTTATTAGAAGGCCGAGATTATATATTGCTTCCACAAGAAGTTTGGAACCAGTTGTATTCGTGGTATG GAGGTGGTCCAGCATTGGCTCGGAAAGTAATCAGTTCAGGTCTTTCTCAGACAGAGTATGCTGTAGAGGTGTATCCTCTCCGTCTTCGGCTATTTGTTAT GCCGAAGGGTGATCAGAGTACAATAAGAATTAGCAAGAAGGAGACAATAGGAGAGCTTCACAAAAGAGCTTGTGAGCTTTTTGATCTGAACTTAGAGCAG GTATGCATTTGGGATTACTATGGCCAACGTAAACATGCTTTGATGAATGACATGGATAGAACACTTGACGACGCCAACTTACAGATGGATCAGGATATTC TGGTGGAGGTTCATAACAATGCCAATGGTACTGCATTGAGTCGTTTTATAAGATCTGCCCAGGGCAATGGATCTACTGTGAAGGAAGCTAGTTCATTTCT TTTAGAGCCTTCTAAGTCAAGCTTATCCATTGCAGGAGGTTTATCTGCAAGCAGGGGTGCTTCTAGAGGCGGCAGCACAGAGCTATCACAAAGTCTGAAT CTGACATCTCAAGGTAGGGAGTTGGATAACACATATGGGATCAGTACTGTTACTACAAGGGGGTCTTCTGGTGGCTTGATTGGGTTGCAGAACCTAGGGA ACACATGCTTTATGAATAGTGCAATACAATGTCTTGTTCACACATCAGAGTTCGCCAAATATTTTCGGGAGGATTATCATCAAGAGATAAATTGGCAAAA CCCACTCGGTATGGTGGGTGAGCTCGCTCTAGCATTTGGTGAGTTACTTCGAAGGCTGTGGGCACCTGGACGAACAGCAATTGCTCCTCGACAATTTAAA ATGAAGTTGGCTCGATTTGCACCTCAATTTAGTGGCTACAATCAGCATGATTCTCAGGAGCTTTTAGCATTTCTTTTAGATGGTCTCCATGAAGATCTGA ATCGTGTTAAACACAAGCCTTATAAAAAGTCTAAAGATGCTGATGGTCGTCCAGATGAAGAAGTTGCTGATGAGTATTGGGCAAATCATATTGCTCGTAA TGATTCTATAATTGTTGATGTTTGCCAGGGCCAGTACAAGTCGACTTTGGTTTGCCCTGAGTGCCATAAAATCTCTGTTACATTCGATCCCTTTATGTAC CTCTCTTTGCCACTTCAATCCACCACTACACGTTCTATGACTGTTACGATTTTTACTTGTGATGGAAGTGCCCTGCCATTTTCTTGCACTGTGACTGTTC CAAAGCAGGGGCGATGCAGGGACTTGATCAATGCGCTTAGCAGTGCTTGTTCCTTGAAGAATAATGAAGACCTTAAACTTGCTGAGGTACGGAACCATTT GTTTCAAAGATTTTTAGAAGACCCCTTAATATCCCTTTCCATGATCAAAGATGATGACCACCTTGTTGCCTACAAGATACCAAAGTCTCTGAAGAAAACA CTTCTGATTAGGTTGATTCATCGCCGCCAAGAACAGGAAATGGGTGCTACACAGGCTGCTCAACATTGGAAACCCTTTGGAACACCTCTTGTCTCTCTGA TCTCGCGTGATGAAGTAATTACAAGAGGTGACATACAGACAGTAGTTAACACAATGCTCTCGCCTTTGTTAAGATCTGAAAGTTTGAGACAAGCTGATAC TTCTGAGCCTTTCCTGTCTTTGGCGGCATCAGAAAAGCGCCGTGACAGCAGTTCTGGTGAAGCGTGTAGTAATTCTATGTCAGATTCAGTGAACAAGGAT GGTAATGCAGTAACATTGTTCAAACTACCTCTCCAGTTGGTTGAGGAAAGTAATGCATGTGTTGATCTTTCTGTGGGAGAAGACAAGGCAATTAAATTAT CCTCAACATCAACATCAGTACTTGTATATGTTGATTGGTCACGGGAGCTCTTAGAAAAGTATGATACTCATTACTTGGAAAACTTGCCTGAAGTGTTCAA GTATGGACCCGTGAATAAGAAGGCTCGTACTGAACCTCTCTCCTTGTACACCTGTCTAGAAGCTTTTCTGCGTGAAGAGCCTTTGGTGCCTGAAGATATG TGGTACTGCCCAAAATGTAAGGAGCGACGGCAAGCAAGTAAAAAGCTTGACTTATGGAGGCTTCCAGAAGTGTTAGTCATCCATTTGAAAAGGTTTTCGT TTAGCAGATCAATGAAGCATAAACTAGAAACTTTTGTCAACTTTCCTATTCATGACTTTGACTTGACAAAGTACATAGCCAACAAGAACAACACTCAACG TCAACTCTATGAACTTTATGCATTGACCAACCATTATGGTGGCATGGGAAGTGGGCACTACACTGCACATATCAAGCTTCTGGACGAGAACAGGTGGTAC AACTTTGATGACACCCACATATCACCTATAAATGAAGAAGATGTGAAATCAGCTGCTGCATATGTTCTCTTTTATCGACGGGTGAAGACAAGTGATGCCA TTAGCAATGGAGGAAAGTCTGGTTCTGGTCATAACAATGGTTCATCCCAGAAGTGA
AA sequence Show only first row Show all	>Potri.006G033800.2 pacid=42766946 polypeptide=Potri.006G033800.2.p locus=Potri.006G033800 ID=Potri.006G033800.2.v4.1 annot-version=v4.1 MKELTVECNNSCGGPQRTPEEERVLIRDIAITSENNSKEGDSFYLITQRWWQHWIDYVNQEQTNVTNDGSSMLENCDAVSSSRRPASIDNSDLIHDANSE ESNVGFEIHDTLLEGRDYILLPQEVWNQLYSWYGGGPALARKVISSGLSQTEYAVEVYPLRLRLFVMPKGDQSTIRISKKETIGELHKRACELFDLNLEQ VCIWDYYGQRKHALMNDMDRTLDDANLQMDQDILVEVHNNANGTALSRFIRSAQGNGSTVKEASSFLLEPSKSSLSIAGGLSASRGASRGGSTELSQSLN LTSQGRELDNTYGISTVTTRGSSGGLIGLQNLGNTCFMNSAIQCLVHTSEFAKYFREDYHQEINWQNPLGMVGELALAFGELLRRLWAPGRTAIAPRQFK MKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKHKPYKKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPECHKISVTFDPFMY LSLPLQSTTTRSMTVTIFTCDGSALPFSCTVTVPKQGRCRDLINALSSACSLKNNEDLKLAEVRNHLFQRFLEDPLISLSMIKDDDHLVAYKIPKSLKKT LLIRLIHRRQEQEMGATQAAQHWKPFGTPLVSLISRDEVITRGDIQTVVNTMLSPLLRSESLRQADTSEPFLSLAASEKRRDSSSGEACSNSMSDSVNKD GNAVTLFKLPLQLVEESNACVDLSVGEDKAIKLSSTSTSVLVYVDWSRELLEKYDTHYLENLPEVFKYGPVNKKARTEPLSLYTCLEAFLREEPLVPEDM WYCPKCKERRQASKKLDLWRLPEVLVIHLKRFSFSRSMKHKLETFVNFPIHDFDLTKYIANKNNTQRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWY NFDDTHISPINEEDVKSAAAYVLFYRRVKTSDAISNGGKSGSGHNNGSSQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Potri.006G033800 [exp]	0	1	Pt-UBP5.3
AT1G23230			unknown protein		Potri.008G133300 [exp]	3.31	0.8177
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.005G011000 [exp]	8.24	0.7791
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Potri.016G000200 [exp]	13.92	0.6575
AT2G30780			Tetratricopeptide repeat (TPR)...		Potri.016G119600 [exp]	15.58	0.7542
AT4G39680			SAP domain-containing protein ...		Potri.005G080500 [exp]	15.77	0.7850
AT3G14400		UBP25	ubiquitin-specific protease 25...		Potri.011G112800 [exp]	19.33	0.7391	UBP25.1
AT1G72390			unknown protein		Potri.001G165800 [exp]	21.44	0.7914
AT3G14270		FAB1B	FORMS APLOID AND BINUCLEATE CE...		Potri.003G072300 [exp]	23.83	0.7554
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Potri.017G013500 [exp]	27.27	0.7472
AT5G03910		ABCB29, ATATH12	ARABIDOPSIS THALIANA ABC TRANS...		Potri.006G211700 [exp]	30.00	0.7426

Compare expression of checked genes

Potri.006G033800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.