Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-NITR1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68570 607 / 0 Major facilitator superfamily protein (.1) AT5G01180 437 / 4e-147 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02040 421 / 1e-140 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 421 / 2e-140 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT1G69870 419 / 1e-139 NRT1.7 nitrate transporter 1.7 (.1) AT3G54140 411 / 3e-137 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT1G18880 377 / 8e-124 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT5G62680 373 / 8e-122 Major facilitator superfamily protein (.1) AT2G02020 370 / 1e-121 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT3G47960 372 / 4e-121 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G032000 [exp] 1002 / 0 AT1G68570 590 / 0.0 Major facilitator superfamily protein (.1) Potri.006G034000 [exp] 811 / 0 AT1G68570 656 / 0.0 Major facilitator superfamily protein (.1) Potri.010G126300 [exp] 603 / 0 AT1G68570 901 / 0.0 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 437 / 4e-147 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.001G351200 [exp] 428 / 3e-143 AT5G62680 677 / 0.0 Major facilitator superfamily protein (.1) Potri.001G248600 [exp] 416 / 4e-139 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.012G071500 [exp] 416 / 1e-138 AT5G62680 779 / 0.0 Major facilitator superfamily protein (.1) Potri.017G076800 [exp] 415 / 3e-138 AT3G47960 680 / 0.0 Major facilitator superfamily protein (.1) Potri.006G096800 [exp] 414 / 4e-138 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017817 [exp] 749 / 0 AT1G68570 637 / 0.0 Major facilitator superfamily protein (.1) Lus10018838 [exp] 674 / 0 AT1G68570 571 / 0.0 Major facilitator superfamily protein (.1) Lus10041466 [exp] 601 / 0 AT1G68570 850 / 0.0 Major facilitator superfamily protein (.1) Lus10035516 [exp] 427 / 2e-143 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10030947 [exp] 417 / 4e-139 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040099 [exp] 413 / 2e-137 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10021132 [exp] 406 / 4e-135 AT3G54140 814 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10000670 [exp] 405 / 1e-134 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011055 [exp] 405 / 1e-134 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10015351 [exp] 405 / 2e-134 AT1G18880 682 / 0.0 nitrate transporter 1.9, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.006G033900.1 pacid=42767799 polypeptide=Potri.006G033900.1.p locus=Potri.006G033900 ID=Potri.006G033900.1.v4.1 annot-version=v4.1 ATGGAATCTCAGGACAATAAGAAATCTCATGAAGAGAAGCAGGAGGAGGTGAAGATCAAGGAAGATGATAAGAGAAAGAAACTTGGAGGCATTAAAGCAA CTCCATTCATCCTTGCCACTGAAATATTTGACAGATTCTCTACCATTGGTTTCCATGCCAACATGATAACATACCTTACTCAGCAGCTGAACTTGCCTCT TGTAAGGGCCTCTAACATTGTCTCAAACTTCGATGGAACCGCTAGCTTAACACCTTTGATCGGTGCTTTGATTGCTGACTCATTTGCTGGCCGATTTTGG GCCATTATCGTTGGTTCCATTATCTTTGAACTGGGATTAATTAGCTTCACCACAACAGCACTACTGAAATCACTACATCCTCCACCTTGTCCAACGCTTG TGGACTGCAAAGAGGCTTCGAATTTCCAACTAAGCACCCTCTACTTGTCTCTACTCCTCTTAGCTATTGGCTTGGGTGGAACTAGGCCTTGTGTTATGAC CTATGCCGCAGACCAATTGGATATGAGCAAATCAAGCGTCGAATCTCGAAGCTGGAACTTTTTCAATTGGTACTATTTTAGCTTGGGATTAGCAAGACTA ACAGCAGTGAGTGTTGTGGTCTACATACAAGATAATGTGAGTTGGGGGTGGGGTCTTGGAATACCTACTATCGCCATGGGTATAGCTTTCATTGTCTTTC TAGCTGGTTCTCCGCTTTATACGAAGGTGAAACCAGGAGGAAGCCCATTGGTCAGAGTAACTCAAGTGATTGTTTCGGCTATAAGGAAGAGAAAAGCTGT GGCTCCAGAAGATTCAAGTCTCTTGTACCAAAACAAAGAACTTGATGCTGCTATATCTGTACATGGAAGGCTTTTACACACCCCTCAGTTCAAGTGGCTT GATAAAGCAGCAGTAATGAAGGATGGTGAAGCAACAGATTCCAACCCACCAAATCCATGGAAGATAGCAACCGTGCATCGAGTAGAGGAGCTAAAATCCT TTCTCAGATTGCTTCCAGTTTGGGCAGCAGGGATTCTACTTGTCACAGCTAATTCACATAGTGGCAGCTTCAATACTCAACAGGCTTGGACTATGAAACG TCATCTGTCAAATTCTTTCCAAATTCCACCAGCTAGCATGTCCGTCTTTGGTATCCTGACCGGGATGACAGGGCTCGTTCTCTACGAACGCCTCTTCGTG CCCTTTGTGCGTAGATTCACAGGAACCCCTGCAGGCATCACATACCTACAAAGAATGGGCATAGGCCTAATCTTCAACATTCTCACGTCAATTGTTTCTG CATTGGTTGAGAAAAAGAGAAGAACGGTGGCAGAGCATCATAACTTATTGGATAACCCTAAAGCCACTGTTCCTATAAGTGTATTCTGGCTAGTTCCTCA GCTTTCCCTTCATGGAATATCAGAAATCTTCATGACTGTTGGACAGTTGGAATTTCTCTATGATCAATCCCCAGAAAGCATGAGAAGCATTGCTTTAGGG TTATTTTGGATAGCAAATTCTATGGGAAATTACTTGGGCACATTTATGGTGTCATTAGTTCATAAGTACACAGGCCACAAGAACAATTGGTTACCTGACA GGAACCTTAATAGAGGAAAGCTGGACTATTATTATTGGCTTGTAACAGGCATCCAAGTTGTAAATTTTGTGTATTTTGTAATTTGTGCCTGGTTTTACAA TTACAAACCCTTGGAAGAAGACATGGAAGCAGATTTTAAAGCATCTGAAGATGGTGCTGCAGGGAATGGAGAGGTAGAACTTGGTACAACTGAAAAGGTT TGA
AA sequence Show only first row Show all	>Potri.006G033900.1 pacid=42767799 polypeptide=Potri.006G033900.1.p locus=Potri.006G033900 ID=Potri.006G033900.1.v4.1 annot-version=v4.1 MESQDNKKSHEEKQEEVKIKEDDKRKKLGGIKATPFILATEIFDRFSTIGFHANMITYLTQQLNLPLVRASNIVSNFDGTASLTPLIGALIADSFAGRFW AIIVGSIIFELGLISFTTTALLKSLHPPPCPTLVDCKEASNFQLSTLYLSLLLLAIGLGGTRPCVMTYAADQLDMSKSSVESRSWNFFNWYYFSLGLARL TAVSVVVYIQDNVSWGWGLGIPTIAMGIAFIVFLAGSPLYTKVKPGGSPLVRVTQVIVSAIRKRKAVAPEDSSLLYQNKELDAAISVHGRLLHTPQFKWL DKAAVMKDGEATDSNPPNPWKIATVHRVEELKSFLRLLPVWAAGILLVTANSHSGSFNTQQAWTMKRHLSNSFQIPPASMSVFGILTGMTGLVLYERLFV PFVRRFTGTPAGITYLQRMGIGLIFNILTSIVSALVEKKRRTVAEHHNLLDNPKATVPISVFWLVPQLSLHGISEIFMTVGQLEFLYDQSPESMRSIALG LFWIANSMGNYLGTFMVSLVHKYTGHKNNWLPDRNLNRGKLDYYYWLVTGIQVVNFVYFVICAWFYNYKPLEEDMEADFKASEDGAAGNGEVELGTTEKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68570			Major facilitator superfamily ...		Potri.006G033900 [exp]	0	1	Pt-NITR1.2
AT3G05390			unknown protein		Potri.004G083800 [exp]	4.24	0.9413
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Potri.016G101400 [exp]	9.59	0.9324	RBE.1
AT5G62280			Protein of unknown function (D...		Potri.015G130500 [exp]	13.74	0.9139
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.006G272600 [exp]	13.85	0.9245
AT3G09220		LAC7	laccase 7 (.1)		Potri.006G094100 [exp]	15.49	0.9197	LAC110a
AT2G03360			Glycosyltransferase family 61 ...		Potri.010G162100 [exp]	16.88	0.9196
AT1G27040			Major facilitator superfamily ...		Potri.014G036200 [exp]	17.88	0.9131
AT3G46280			protein kinase-related (.1)		Potri.013G030866 [exp]	20.19	0.9183
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Potri.010G211800 [exp]	28.80	0.9104
AT1G68150	WRKY	ATWRKY9, WRKY9	WRKY DNA-binding protein 9 (.1...		Potri.001G208600 [exp]	29.94	0.9057	Pt-WRKY9.1

Compare expression of checked genes

Potri.006G033900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.