Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	NITR1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68570 657 / 0 Major facilitator superfamily protein (.1) AT5G01180 451 / 1e-152 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT1G62200 451 / 3e-152 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G02040 447 / 8e-151 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT3G54140 442 / 5e-149 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT1G69870 409 / 2e-135 NRT1.7 nitrate transporter 1.7 (.1) AT3G16180 396 / 8e-131 Major facilitator superfamily protein (.1) AT2G02020 394 / 1e-130 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT1G18880 389 / 3e-128 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT1G52190 372 / 3e-121 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G033900 [exp] 783 / 0 AT1G68570 607 / 0.0 Major facilitator superfamily protein (.1) Potri.016G032000 [exp] 773 / 0 AT1G68570 590 / 0.0 Major facilitator superfamily protein (.1) Potri.010G126300 [exp] 655 / 0 AT1G68570 901 / 0.0 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 462 / 2e-156 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.001G248600 [exp] 441 / 3e-148 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 440 / 3e-148 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 440 / 5e-148 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.009G042400 [exp] 438 / 2e-147 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.011G120000 [exp] 427 / 1e-142 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017817 [exp] 855 / 0 AT1G68570 637 / 0.0 Major facilitator superfamily protein (.1) Lus10018838 [exp] 748 / 0 AT1G68570 571 / 0.0 Major facilitator superfamily protein (.1) Lus10041466 [exp] 641 / 0 AT1G68570 850 / 0.0 Major facilitator superfamily protein (.1) Lus10035516 [exp] 442 / 8e-149 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10030947 [exp] 441 / 5e-148 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011055 [exp] 439 / 1e-147 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10021132 [exp] 435 / 6e-146 AT3G54140 814 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10000670 [exp] 434 / 1e-145 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040099 [exp] 434 / 1e-145 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10018207 [exp] 429 / 2e-141 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.006G034000.1 pacid=42770329 polypeptide=Potri.006G034000.1.p locus=Potri.006G034000 ID=Potri.006G034000.1.v4.1 annot-version=v4.1 ATGAAACACGAAATGGAAATGGAGCTGGAAAGTAATAGCAGCAAGGTTGGCAATGGGAAAGGGAAAGAGGAGGAGGAGGAGGAGGAGAAGAAAGAAGATA GCAAGAGGAGGAAGCTTGGAGGCATCAAAACAATGCCATTCATCCTATCAAATGAAATATGCGACAAGTTTGCTGCAGCTGGTTTCTATGCCAACATGAT AACATACCTGACCCAGCAGCTGAACTTGCCTCTGGTTAAGGCCTCTAACACACTCACCAACTTTGGTGGGATGGGTAGCTTTACGCCACTCATCGGTGCT TTGATCGCCGATTCCTATGCCGGCCGGTATTGGACCATCATCGGTGGTTCCATTATTTACGAATTGGGAATGATCAGCCTAACAGTGTCAGCAGTGCTCC CATCACTGAGGCCACCTCCATGTCCATCTCAAGTGAACTGCAAAGAAGCCTCAAATTCTCAGCTATGGATCCTTTATATGTCGTTAATCCTCACTTCCAT AGGCTCTGGTGGCATTAAGCCTTGTGTTGTAACCTTTGCTGCAGACCAATTCGACATGACCAAATCAGCTGTTGGGTCACGCAGCTGGAACTTCTTCAAT TGGTACTATTTTTGCATGGGAATGGCGACATTAACAGCTTTGACTGTTGTAGTTTATATTCAAGACAACGTGGGTTGGGGCTGGGGTCTCGGAATCCCAG CTATCGGCATGGCTCTATCCATTGTAGCCTTTATATTTGGTTCTTCACTTTATAATAAATTAAAACCAGAAGGCAGCCCTTTGGTTAGATTGGCTCAGGT CGTCGTTGCTGCAGCGAAGAAGAGGAAAGAAGTGATGCCACTAGACCCTGGTATGTTGTACCAAAATAAAGAGCTTGATGCTGCTATTTCTGTCAACGGA AGGCTTTTACACTCCGATCAATTCAAGTGGTTTGACAAAGCTGCAATAGTAACAAATGAAGATGCAAAGGATTCAAAGTCACCAAATCTATGGAGGATTG CCACTGTCCACCGAATCGAGGAGCTAAAATGCATCGTCAGAATGCTGCCCATTTGGTCAGCAGGAATCCTACTTGTAACAGCTTCCTCACATCTCCATAG CTTTGTTATTCAACAAGCTCGGTCTATGGACCGTCACCTGTCGCACTCCTTTGAAATCCCACCAGCTAGTTTTTCCGTCTTCAGCATCCTAACAATGCTC ATAGGACTTGTCTTGTACGAACGCCTATTCGTTCCCTTTGCTCGTCGCTTTACGGGAAACCCTTCAGGCATCACTTGCCTGCAAAGAATGGGCGTAGGAT TCTTTATTAACATAATTGCAACTATCGTTTCAGCATTAGTTGAGGTCAAAAGAAAACAAGTCGCTGCTCTTCACAACCTATTGGATGCTCCTCAAGCCAT TATCCCAATAAGTGTGTTTTGGTTACTTCCTCAATATATTCTCCATGGAATAGCAGACGTTTTCATGTCTGTAGGGCACATGGAATTCCTCTATGACCAA TCACCAGAAACCATGAGAAGCACGGCCGCCGCACTCAATAGTCTAGAAGTTTCCATGGGGAACTACATAGGTACACTCGTTGTGTCCCTTGTTCACAAGT ATACTGGCCAGAAAAATAATTGGTTGCCTGATAGGAACCTTAATGGGGGAAAATTGGATTACTATTATTGGCTTGTAACGGGGATCCAAGTTATAAATCT TGTGTATTATGTAATTTGTGCTTGGTTTTACACTTACAAACCCTTAGAGGAGGTCAAGGAAGAAGATGATGATGTTCCAGCAGAAGACGAAATTCAACAC AAGCGGTTGAATTATGCTGAAGGGAATGGAGAGGTAGAACTTCGTAGGAATGTGATAGTATAG
AA sequence Show only first row Show all	>Potri.006G034000.1 pacid=42770329 polypeptide=Potri.006G034000.1.p locus=Potri.006G034000 ID=Potri.006G034000.1.v4.1 annot-version=v4.1 MKHEMEMELESNSSKVGNGKGKEEEEEEEKKEDSKRRKLGGIKTMPFILSNEICDKFAAAGFYANMITYLTQQLNLPLVKASNTLTNFGGMGSFTPLIGA LIADSYAGRYWTIIGGSIIYELGMISLTVSAVLPSLRPPPCPSQVNCKEASNSQLWILYMSLILTSIGSGGIKPCVVTFAADQFDMTKSAVGSRSWNFFN WYYFCMGMATLTALTVVVYIQDNVGWGWGLGIPAIGMALSIVAFIFGSSLYNKLKPEGSPLVRLAQVVVAAAKKRKEVMPLDPGMLYQNKELDAAISVNG RLLHSDQFKWFDKAAIVTNEDAKDSKSPNLWRIATVHRIEELKCIVRMLPIWSAGILLVTASSHLHSFVIQQARSMDRHLSHSFEIPPASFSVFSILTML IGLVLYERLFVPFARRFTGNPSGITCLQRMGVGFFINIIATIVSALVEVKRKQVAALHNLLDAPQAIIPISVFWLLPQYILHGIADVFMSVGHMEFLYDQ SPETMRSTAAALNSLEVSMGNYIGTLVVSLVHKYTGQKNNWLPDRNLNGGKLDYYYWLVTGIQVINLVYYVICAWFYTYKPLEEVKEEDDDVPAEDEIQH KRLNYAEGNGEVELRRNVIV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68570			Major facilitator superfamily ...		Potri.006G034000 [exp]	0	1	NITR1.3
AT4G17520			Hyaluronan / mRNA binding fami...		Potri.002G138300 [exp]	13.63	0.7102
AT3G09780		CCR1, ATCRR1	CRINKLY4 related 1 (.1)		Potri.016G089200 [exp]	13.74	0.7561
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Potri.005G122200 [exp]	15.74	0.7061
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Potri.009G099300 [exp]	23.64	0.6960
AT3G02870		VTC4	Inositol monophosphatase famil...		Potri.010G156500 [exp]	31.85	0.6696
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Potri.002G086000 [exp]	47.95	0.6338
AT1G16260			Wall-associated kinase family ...		Potri.018G148432 [exp]	49.04	0.6643
AT3G02870		VTC4	Inositol monophosphatase famil...		Potri.010G156300 [exp]	55.41	0.6426
AT2G29690		ATHANSYNAB, ASA...	anthranilate synthase 2 (.1)		Potri.009G044300 [exp]	63.24	0.6888
AT1G53700		PK3AT, WAG1	PROTEIN KINASE 3 ARABIDOPSIS T...		Potri.001G435900 [exp]	69.28	0.6684	Pt-PSPK3.1

Compare expression of checked genes

Potri.006G034000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.