Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56640 1268 / 0 SEC15A exocyst complex component sec15A (.1) AT4G02350 772 / 0 SEC15B exocyst complex component sec15B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G032100 [exp] 1484 / 0 AT3G56640 1265 / 0.0 exocyst complex component sec15A (.1) Potri.002G203200 [exp] 836 / 0 AT4G02350 1186 / 0.0 exocyst complex component sec15B (.1) Potri.014G127400 [exp] 824 / 0 AT4G02350 1187 / 0.0 exocyst complex component sec15B (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038993 [exp] 1294 / 0 AT3G56640 1216 / 0.0 exocyst complex component sec15A (.1) Lus10010439 [exp] 1280 / 0 AT3G56640 1202 / 0.0 exocyst complex component sec15A (.1) Lus10027288 [exp] 1273 / 0 AT3G56640 1197 / 0.0 exocyst complex component sec15A (.1) Lus10009856 [exp] 475 / 3e-159 AT4G02350 689 / 0.0 exocyst complex component sec15B (.1) Lus10010296 [exp] 380 / 7e-126 AT4G02350 556 / 0.0 exocyst complex component sec15B (.1) Lus10010295 [exp] 342 / 2e-110 AT4G02350 517 / 5e-179 exocyst complex component sec15B (.1) Lus10009857 [exp] 84 / 3e-19 AT4G02350 119 / 9e-33 exocyst complex component sec15B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF04091 [poplar] [flax] Sec15 Exocyst complex subunit Sec15-like
Representative CDS sequence Show only first row Show all	>Potri.006G034200.1 pacid=42769627 polypeptide=Potri.006G034200.1.p locus=Potri.006G034200 ID=Potri.006G034200.1.v4.1 annot-version=v4.1 ATGGATGCGAAGCCTAAGAGGAGAACTGCTGTAGAGAATGGGGATGGAGGAGAGGACTTGGTGCTTGCAACTTTGATTGGCAATGGAGAGGATTTGGGTC CAATTGTCAGGCATGCATTTGAAATGGGGCGGCCTGAATCGCTGTTTCATCAGCTCAAGTCTGTTGTGAGGAAGAAGGAAGTTGAAATCGAGGAGCTGTG CAAGAGCCATTACGAGGAATTCATTCTTGCGGTTGATGAACTTCGTGGTGTATTGGTTGATGCTGAAGAGTTAAAAAGTGAGCTTGCGAGTGAGAATTTT CGATTGCAAGAAGTTGGGAGTGCTCTTTTGGTCAAACTTGAGGAGCTTCTTGAATCTTATTGGATTAAGAAGAATGTGACTGAAGCTATCAAAACATCGA AGATATGCATACAAGTTTTGGAACTCTGTGTGAAGTCTAACAACCACATGTTGGAAAGCCAATTTTACCCAGCGTTGAAAACAGTGGATCTGATCGAGAG GACTTACTTGCAGAACATCCCTGTGAAGGCACTTAAAACGGCCATAGGGAAGACAATTCCAGTAATAAAATCGCATATTGAGAAGAAAGTTACCAGTCAA TTTAATGAATGGCTAGTTCAAGTGAGGAGTTCTGCTAAGGATATTGGACAGACAGCAATAGGCCATACTTTGTCAGCTCGTCAAAGAGATGAGGAAATGC TGGAACATCAGAGAAAAGCCGAAGAACAAAACATTTCAGGGTTAGGAGATTTTGTATATACTCTGGATGTTGAGGAAAATGATGAAGATTCAGTTGTGAA GTTTGATCTCACTCCTCTTTTCCGGGTGTATCATATTCATGATTGCCTTGGAATCCAAGAGCAGTTTCGTGAATACTACTATAAGAATCGGTTATTGCAA CTCAATTCAGACTTGCAAATCTCTACTACTCAGCCATTTGTTGAATCTTATCAAACATATTTGGCCCAAATTGCTGGTTACTTCATAGTGGAGGATCGGG TCTTAAGAACTGCTGGGGATCTTTTGTCAGCAAATCATGTTGAGACAATGTGGGAAGTGGCTGTGGCTAAAATGACATCTGTTCTGGAGGAACAGTTTTC CCATATGGATTCTGCAACTCATCTTCTGCTGGTGAAGGATTATGTCACTCTTCTTGGGGAAACTTTTAGACAATATGGGTACGAAGTTGGCCAAATTCTC GAGGTAGTCGATCGTAGCCGAGATAAGTATCATGAGCTTCTTTTGGGAGAATGTCATGAGCAAATTGTCAATACTCTTGGAAGTGACACCTATGAGCAGA TGGTAATGAGAAAGGATGCTGATTATGAGAATAATGTCCTCTCCTTTCATCTTCAAACCTCAGATATAATGCCGGCTTTCCCATATTATGCACCATTCTC CTCCATGGTACCTGATACTTGCCGCATTGTTAGATCTTTCATCAAAGGTTCTGTTGATTACTTATCTTATGGGGTGCATACTAATTTTTATGACATTGTG AGAAAATACTTGGACAAGCTCTTGATTGATGTGCTAAATGAAGTGATGCTTAGCACGATCCATGGGGGTGCAGTTGGTGTGTCTCAAGCCATGCAGATTG CTGCAAACATATCTGTTCTTGAGAGAGCTTGTGATTTTTTTCTTCGATATGCAGCCCAACTATGCGGAATCCCGATCCGATCAGTTGAGAGGCCTCAAGC TAGTTTGACAGCCAAGGTGGTCCTGAAAACTTCAAGGGATGCAGCTTATCTTGCTCTGCTGAATTTGGTGAACACCAAGTTAGATGAATTCATGAATATT ACAGAAAATATCAATTGGACTTCAGAGGAAACGCCACAAAATGGGAATGACTATATAAATGAGGCGGTTATTTACCTGGATACTATTTTGTCAACTGCAC AACAAATTCTTCCATTGGATGCTCTACACAAAGTTGGGAGTGGTGCCCTCGAGCACATTTCCAATTCCATTGTCGGAGCATTTCTTAGTGATAGCGTAAG GAGGTTCAATGCTAATGCAGTCCTATCTCTCAACAATGATTTGAAGATTATAGAGGATTTTGCTGATGAGAGGTTTCATAGCACCGGCCTGAGTGAAATA TACAAGGAAGGTAGTTTTAGAGGCTGCTTGTTAGAAGCACGACAGTTGATTAACCTTTTGTCAAGCAGCCAGCCAGAGAACTTCATGAATCCTGTGATAA GGCAGAAAAACTATGATGCTCTGGATTATAAAAACGTGGCCAGCATCTGTGATAAATTCAAGGATTCCCATGATGGAATCTTTGGTAGCCTCTCAACCAG AAATACTAAGCAAAGTGCACGGAAGAAATCAATGGACATGCTGAAGAAAAGATTGAAGGACTTCAATTGA
AA sequence Show only first row Show all	>Potri.006G034200.1 pacid=42769627 polypeptide=Potri.006G034200.1.p locus=Potri.006G034200 ID=Potri.006G034200.1.v4.1 annot-version=v4.1 MDAKPKRRTAVENGDGGEDLVLATLIGNGEDLGPIVRHAFEMGRPESLFHQLKSVVRKKEVEIEELCKSHYEEFILAVDELRGVLVDAEELKSELASENF RLQEVGSALLVKLEELLESYWIKKNVTEAIKTSKICIQVLELCVKSNNHMLESQFYPALKTVDLIERTYLQNIPVKALKTAIGKTIPVIKSHIEKKVTSQ FNEWLVQVRSSAKDIGQTAIGHTLSARQRDEEMLEHQRKAEEQNISGLGDFVYTLDVEENDEDSVVKFDLTPLFRVYHIHDCLGIQEQFREYYYKNRLLQ LNSDLQISTTQPFVESYQTYLAQIAGYFIVEDRVLRTAGDLLSANHVETMWEVAVAKMTSVLEEQFSHMDSATHLLLVKDYVTLLGETFRQYGYEVGQIL EVVDRSRDKYHELLLGECHEQIVNTLGSDTYEQMVMRKDADYENNVLSFHLQTSDIMPAFPYYAPFSSMVPDTCRIVRSFIKGSVDYLSYGVHTNFYDIV RKYLDKLLIDVLNEVMLSTIHGGAVGVSQAMQIAANISVLERACDFFLRYAAQLCGIPIRSVERPQASLTAKVVLKTSRDAAYLALLNLVNTKLDEFMNI TENINWTSEETPQNGNDYINEAVIYLDTILSTAQQILPLDALHKVGSGALEHISNSIVGAFLSDSVRRFNANAVLSLNNDLKIIEDFADERFHSTGLSEI YKEGSFRGCLLEARQLINLLSSSQPENFMNPVIRQKNYDALDYKNVASICDKFKDSHDGIFGSLSTRNTKQSARKKSMDMLKKRLKDFN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56640		SEC15A	exocyst complex component sec1...		Potri.006G034200 [exp]	0	1
AT4G21890			unknown protein		Potri.011G001800 [exp]	3.74	0.7426
AT3G28040			Leucine-rich receptor-like pro...		Potri.002G233600 [exp]	14.35	0.7292
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Potri.009G140100 [exp]	18.89	0.7170
AT1G63850			BTB/POZ domain-containing prot...		Potri.001G100900 [exp]	29.58	0.7152
AT5G65950			unknown protein		Potri.001G457201 [exp]	31.73	0.6685
AT3G08030			Protein of unknown function, D...		Potri.009G058800 [exp]	32.86	0.7123
AT1G61900			unknown protein		Potri.011G003000 [exp]	33.82	0.6530
AT4G30020			PA-domain containing subtilase...		Potri.018G143400 [exp]	38.79	0.6990
AT3G12710			DNA glycosylase superfamily pr...		Potri.010G175300 [exp]	43.54	0.6658
AT5G59010			Protein kinase protein with te...		Potri.009G039500 [exp]	45.66	0.6771

Compare expression of checked genes

Potri.006G034200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.