Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56650 372 / 1e-130 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) AT1G77090 80 / 3e-17 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G072400 [exp] 87 / 1e-19 AT1G77090 345 / 2e-120 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042812 [exp] 365 / 3e-128 AT3G56650 346 / 3e-121 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10029785 [exp] 365 / 3e-128 AT3G56650 343 / 4e-120 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10018931 [exp] 87 / 1e-19 AT1G77090 359 / 1e-126 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10028633 [exp] 86 / 2e-19 AT1G77090 348 / 3e-122 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0619 [poplar] [flax] Mog1p_PsbP PF01789 [poplar] [flax] PsbP PsbP
Representative CDS sequence Show only first row Show all	>Potri.006G034300.3 pacid=42768925 polypeptide=Potri.006G034300.3.p locus=Potri.006G034300 ID=Potri.006G034300.3.v4.1 annot-version=v4.1 ATGGCAACAAGTTACAGAGTCCAGGTGTCTCATGGCATCCATGAACGGATAAGAGTAAGCGCGGGATGGCCCCAACCCCATCCTTCAAAATCTGTCTCTC TCATTTCTCTTGAAGAATCCTTCAAAATGGCAACTGCTTCACTAACTCCAATTTTCTCATCTCCACTCAAAACATCAAGAACAACAACATTAACAACAAC AACAACGTCGTTGGACCAACATAGAAACCAGGTTGTTTTGAGGAGACAAATCTTGAAGGGACTGGTGTTGTCTCCATTAATCTTGATTAAAGCACCTCCA AGTTCAGAAGCTAGAGAGATTGAGGTTGGTTCTTACTTGCCACCTTCTCCAACGGACCCTTCTTTTGTTCTCTTCAAAGCCAGCTCAAAAGACACCCCTG CTCTTCGTGCAGGAAATGTTCAGCCTTACCAGTTCATCCTCCCACCGAGTTGGAAGCAAACACGCGTAGCAAACATACTATCCGGTAATTACTGCCAACC TAAGTGTGCAGAGCCCTGGGTTGAGGTAAAGTTTGAAGATGAAAAGCAAGGAAAAGTCCAGGTGGTGGCTTCACCTTTGATTCGCCTGACTAACAAGCCT AATGCAACAATTGAAGAGATTGGAAACCCGGAGAAGTTGATTGCCTCTCTTGGCCCTTTTGTTACAGGAAACTCTTATGATCCTGATGAGCTCTTGGAAA CAAAGATTGAAAAGTTTGGTGATCAGACGTATTACAAGTATATGCTTGAGACACCATTTGCTTTGACGGGGACGCACAATCTTGCAAAGGCAACAGCTAA AGGAAGCACTGTTGTGCTGTTTGTAGCAAGTGCAAATGATAAACAATGGCAAGCATCTGAGAAAACTCTAAAAGCCATTCTTGATTCCTTCCAAATTTAG
AA sequence Show only first row Show all	>Potri.006G034300.3 pacid=42768925 polypeptide=Potri.006G034300.3.p locus=Potri.006G034300 ID=Potri.006G034300.3.v4.1 annot-version=v4.1 MATSYRVQVSHGIHERIRVSAGWPQPHPSKSVSLISLEESFKMATASLTPIFSSPLKTSRTTTLTTTTTSLDQHRNQVVLRRQILKGLVLSPLILIKAPP SSEAREIEVGSYLPPSPTDPSFVLFKASSKDTPALRAGNVQPYQFILPPSWKQTRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKP NATIEEIGNPEKLIASLGPFVTGNSYDPDELLETKIEKFGDQTYYKYMLETPFALTGTHNLAKATAKGSTVVLFVASANDKQWQASEKTLKAILDSFQI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56650			Mog1/PsbP/DUF1795-like photosy...		Potri.006G034300 [exp]	0	1
AT4G35250			NAD(P)-binding Rossmann-fold s...		Potri.004G183100 [exp]	1.73	0.9804
AT5G30510		ARRPS1, RPS1	ribosomal protein S1 (.1)		Potri.010G150300 [exp]	5.65	0.9710
AT2G01755			unknown protein		Potri.008G135400 [exp]	5.91	0.9650
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Potri.012G106600 [exp]	6.00	0.9692
AT5G01920		STN8	State transition 8, Protein ki...		Potri.016G138500 [exp]	6.48	0.9653
AT1G31920			Tetratricopeptide repeat (TPR)...		Potri.001G135400 [exp]	6.63	0.9608
AT3G50820		OEC33, PSBO2, P...	OXYGEN EVOLVING COMPLEX SUBUNI...		Potri.007G033700 [exp]	8.12	0.9699	PSBO.2
AT4G01690		PPOX, HEMG1, PP...	Flavin containing amine oxidor...		Potri.002G186300 [exp]	10.95	0.9444
AT4G37925		NdhM, NDH-M	NADH dehydrogenase-like comple...		Potri.002G077600 [exp]	11.74	0.9410
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Potri.001G390800 [exp]	12.72	0.9638

Compare expression of checked genes

Potri.006G034300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.