Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40950 476 / 5e-158 bZIP BZIP17 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G10800 357 / 6e-113 bZIP BZIP28 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G56660 327 / 5e-102 bZIP BZIP49 basic region/leucine zipper motif protein 49 (.1) AT3G17609 49 / 1e-06 bZIP HYH HY5-homolog (.1.2.3.4) AT5G11260 49 / 1e-06 bZIP TED5, HY5 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G032400 [exp] 972 / 0 AT2G40950 498 / 9e-167 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.018G029500 [exp] 50 / 7e-07 AT5G11260 185 / 2e-60 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.006G251800 [exp] 50 / 9e-07 AT5G11260 143 / 6e-44 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.010G004200 [exp] 50 / 2e-06 AT3G17609 132 / 1e-39 HY5-homolog (.1.2.3.4) Potri.002G018400 [exp] 45 / 6e-05 AT4G35900 133 / 5e-38 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G091400 [exp] 45 / 0.0002 AT2G40620 300 / 2e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.005G257900 [exp] 44 / 0.0002 AT1G42990 101 / 1e-24 Bbasic region/leucine zipper motif 60, basic region/leucine zipper motif 60 (.1) Potri.005G109500 [exp] 43 / 0.0005 AT4G35900 179 / 5e-55 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.001G374200 [exp] 43 / 0.0007 AT3G58120 282 / 6e-94 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038995 [exp] 437 / 5e-143 AT2G40950 421 / 2e-137 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10027290 [exp] 431 / 1e-140 AT2G40950 429 / 2e-140 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10010440 [exp] 419 / 4e-136 AT2G40950 466 / 5e-155 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10012104 [exp] 402 / 6e-129 AT2G40950 454 / 9e-150 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10002028 [exp] 49 / 2e-06 AT5G11260 182 / 5e-59 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10002900 [exp] 48 / 4e-06 AT5G11260 197 / 3e-65 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF00170 [poplar] [flax] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Potri.006G034500.1 pacid=42770244 polypeptide=Potri.006G034525.1.p locus=Potri.006G034500 ID=Potri.006G034500.1.v4.1 annot-version=v4.1 ATGGCCGATCCCATCCTCGACCACCACCCACCTCCGCCGACGCCACCACCACCATCTCTGCCGCAGAATCCGAATACGTCGACGGAGAACATGGCGGAGG ACTTCAATTCCCAACTCCCAACCCCTCCCCTCGATCCTCTCTTTTTCGATCAAAATCCTGACAACTTTGACGTTCTAGATCTGTCCTCTAATTTCGACGA TATTTCCGATTTTGACATCACCTTTGATGATCTCCCTGACCTCTACTTACCTTACGAGAACGAACAGTTCTTAATCCCCAACAACAACACAGTCAACCCT GATCCGGGTCAACCCGATAATAACCTAGATCTTCAACCGGGTCCCTTTGAAGGTTGTTTTGGGGATTTTGCTTCTAATACGGTCAATTTGGAGTCGACCG ACTCGGGTGGACCCGGGACTTGTGGCGATCATGGCGGGTTGGAGGTTGATAAGTATGTTGATAAGTATCTTAATCCGTCGCCGTCCGAGGCTGAGAGTTG TGATTCGGGTGGTTCTGATTATCGGAGCTCGGTCTTGAGTCCGGTGTCGTCTCATGGGTCTGGGAATTCCGGGTCGGGTGTGTTGAGTGCTGGTTCGCCG GAATCAGGTACGAATGTTAATCCCTGTAATTTTGTTGTTGATAAAAAATTTGTGAAAACTGAAACTGAAAGTGCGAAGAAGCGGAAAAGTGCTAAAATTG CGGTAGCTAAGAGGAAAAAAGAAATGGGCGATGAAGAAAATGGAGAGATTATGCGGAACTTGAAGTCCCGGAAAGCGGAGAGTGAGAATGTGAGTGTTAA TGTTAGTGGGAGTGCGAGTTTGAGTGGAGAAGAGGACAGGAGGAAGGCGAGGTTAATGAGGAATCGTGAAAGTGCACAGTTGTCTAGGCAAAGAAAGAAG CATTATGTTGAGGAATTAGAAGATAAGGTGAGAATGATGCATTCCACGATAGCTCAATTGAATGGTAAAGTTTCCTATTTTATGGCTGAAAACGCCACTT TACGACGACAATTGAGTGGAAACGGTGCATGTCCGCCACCAATGTATGCGCCCATGGCGCCTTATCCCTGGGTGCCGTGTGCACCTTATGTTGTTAAGCC ACAAGGGTCTCAAGTGCCATTGGTTCCTATTCCTAGGTTGAAGCCACAAAAGACTGTGCCAGTGGCAAAGCCTAAGAAGGTTGAGAGTAAGAAAGGGGAG GGGAAAACTAAGAAGGTTGCCAGTGTTAGTTTGTTTGGTTTCTTGTTTTTTATTTTGTTGTTCCGTTGTTTGGTTCCGATCGTGGATGTTAAGTTTGGAG GAGTCAGAGAGGGTGGGATGGGTGGGCTTGGTTTTGTTAGTGAGAAGTTTTTTGATCAGCATAAAGGAAGGGTTTTGATTGTTGATGGGCACACAAATGG GTCGCATGAGAAGGTCGGTGTTGGGTATTCTAATTATAGAAGACATTGTGAGAGAGGTCATAATGGCTGTCTGGAGCATGATTCTGCAAATAAAGGAGCT TCTGAGCGTTTACCTGGATCCGATGAATTTGGTCAGTTTGGTAATGCCAGTGAACACCTCGTTGCGTCCTTGTACGTACCAAGAAATGATAAGCTTGTGA AAATAGATGGAAACTTGATAATTCATTCTGTTCTGGCAAGCGAGAGACCTATGGCCTCTCACGAGAGTCCTGAAGTGAATATCACAAAGGAGACGGCACT GGCTATTCCTGGTGTTGGTAATAATAGAGGGAGACATTCTCATGTGTATAGAACTCATACCGAGCGACAGAAGGCGCTTGATTCTGGATCTGCTGACACG TCAAAGGACAATTTGAAGTCATCCGCAGCTAAAGGTAAACTGCAGCAGTGGTTCCGTGAAGGCCTTGCAGGGCCATTGTTGAGTCATGGTATGTGCACTG AAGTTTTCCAGTTTGATGTCTCACCTGCACCAGGAGCCATAGTTCCTGCTTCCTCAGTTGCCAATATGACAGCAGAGCGCCAACAGAATAATTGTACTCA CCTCAAGAAGGGGAACAATAGAAGGATCCTCCGTGGCCTGCCAATTCCTCTTCCGGGATCTGATCTCAATATTACTGGAGAACATGTTGGAAGGAACACC CAGAAAGAGAACTTTCATGGCAATAAATCGGTTTCTCCAATGGTTGTCTCTGTCCTCGTTGATCCCAGAGAGTCCAGCGACAGGGAGGTTGATGGCGTGA TCACCCCGAAGTCACTTTCTCGGATTTTTGTCGTGGTGCTCTTAGACAGCATAAAATATGTAACTTATTCATGCGTGCTTCCGAGCGCTGGTCCTCTCCT ACACCTGGTGACAACTTGA
AA sequence Show only first row Show all	>Potri.006G034500.1 pacid=42770244 polypeptide=Potri.006G034525.1.p locus=Potri.006G034500 ID=Potri.006G034500.1.v4.1 annot-version=v4.1 MADPILDHHPPPPTPPPPSLPQNPNTSTENMAEDFNSQLPTPPLDPLFFDQNPDNFDVLDLSSNFDDISDFDITFDDLPDLYLPYENEQFLIPNNNTVNP DPGQPDNNLDLQPGPFEGCFGDFASNTVNLESTDSGGPGTCGDHGGLEVDKYVDKYLNPSPSEAESCDSGGSDYRSSVLSPVSSHGSGNSGSGVLSAGSP ESGTNVNPCNFVVDKKFVKTETESAKKRKSAKIAVAKRKKEMGDEENGEIMRNLKSRKAESENVSVNVSGSASLSGEEDRRKARLMRNRESAQLSRQRKK HYVEELEDKVRMMHSTIAQLNGKVSYFMAENATLRRQLSGNGACPPPMYAPMAPYPWVPCAPYVVKPQGSQVPLVPIPRLKPQKTVPVAKPKKVESKKGE GKTKKVASVSLFGFLFFILLFRCLVPIVDVKFGGVREGGMGGLGFVSEKFFDQHKGRVLIVDGHTNGSHEKVGVGYSNYRRHCERGHNGCLEHDSANKGA SERLPGSDEFGQFGNASEHLVASLYVPRNDKLVKIDGNLIIHSVLASERPMASHESPEVNITKETALAIPGVGNNRGRHSHVYRTHTERQKALDSGSADT SKDNLKSSAAKGKLQQWFREGLAGPLLSHGMCTEVFQFDVSPAPGAIVPASSVANMTAERQQNNCTHLKKGNNRRILRGLPIPLPGSDLNITGEHVGRNT QKENFHGNKSVSPMVVSVLVDPRESSDREVDGVITPKSLSRIFVVVLLDSIKYVTYSCVLPSAGPLLHLVTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Potri.006G034500 [exp]	0	1
AT5G60250			zinc finger (C3HC4-type RING f...		Potri.009G150100 [exp]	4.47	0.8321
AT5G46550			DNA-binding bromodomain-contai...		Potri.001G355300 [exp]	5.19	0.8244
AT3G17120			unknown protein		Potri.008G102700 [exp]	6.32	0.8054
AT1G05840			Eukaryotic aspartyl protease f...		Potri.014G146400 [exp]	6.70	0.7907
AT4G10710		SPT16	global transcription factor C ...		Potri.013G004500 [exp]	7.61	0.8476	GTC903
AT3G27260		GTE8	global transcription factor gr...		Potri.001G335000 [exp]	8.36	0.8123	GTE903
AT2G46040	ARID		ARID/BRIGHT DNA-binding domain...		Potri.002G161100 [exp]	9.48	0.8083
AT3G05380	MYB	ALY2, ATALY2	ARABIDOPSIS THALIANA ALWAYS EA...		Potri.005G029000 [exp]	12.96	0.8075
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014360 [exp]	13.78	0.7309
					Potri.010G118500 [exp]	14.56	0.7499

Compare expression of checked genes

Potri.006G034500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.