Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51440 69 / 2e-14 HSP20-like chaperones superfamily protein (.1) AT4G25200 69 / 2e-14 ATHSP23.6-MITO mitochondrion-localized small heat shock protein 23.6 (.1) AT4G27670 51 / 5e-08 HSP21 heat shock protein 21 (.1) AT1G07400 50 / 7e-08 HSP20-like chaperones superfamily protein (.1) AT1G59860 48 / 3e-07 HSP20-like chaperones superfamily protein (.1) AT1G53540 47 / 8e-07 HSP20-like chaperones superfamily protein (.1) AT4G16550 47 / 2e-06 HSP20-like chaperone (.1) AT5G47590 45 / 8e-06 Heat shock protein HSP20/alpha crystallin family (.1) AT1G52560 44 / 2e-05 HSP20-like chaperones superfamily protein (.1.2) AT4G16560 44 / 3e-05 HSP20-like chaperone (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G075900 [exp] 87 / 3e-21 AT4G25200 61 / 4e-11 mitochondrion-localized small heat shock protein 23.6 (.1) Potri.003G076000 [exp] 73 / 4e-16 AT4G25200 130 / 7e-38 mitochondrion-localized small heat shock protein 23.6 (.1) Potri.003G109200 [exp] 60 / 4e-11 AT4G25200 191 / 2e-61 mitochondrion-localized small heat shock protein 23.6 (.1) Potri.009G021400 [exp] 51 / 5e-08 AT4G25200 108 / 3e-29 mitochondrion-localized small heat shock protein 23.6 (.1) Potri.012G022400 [exp] 49 / 4e-07 AT4G27670 221 / 7e-73 heat shock protein 21 (.1) Potri.009G147900 [exp] 47 / 6e-07 AT2G29500 193 / 5e-64 HSP20-like chaperones superfamily protein (.1) Potri.009G039200 [exp] 46 / 2e-06 AT1G07400 201 / 3e-67 HSP20-like chaperones superfamily protein (.1) Potri.009G148000 [exp] 46 / 2e-06 AT2G29500 190 / 7e-63 HSP20-like chaperones superfamily protein (.1) Potri.006G093400 [exp] 44 / 1e-05 AT1G53540 112 / 5e-32 HSP20-like chaperones superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031154 [exp] 72 / 2e-15 AT4G25200 224 / 1e-74 mitochondrion-localized small heat shock protein 23.6 (.1) Lus10031730 [exp] 64 / 3e-12 AT4G25200 215 / 3e-69 mitochondrion-localized small heat shock protein 23.6 (.1) Lus10028937 [exp] 61 / 5e-11 AT3G60600 305 / 2e-101 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10006444 [exp] 44 / 1e-05 AT4G27670 135 / 1e-39 heat shock protein 21 (.1) Lus10042408 [exp] 39 / 0.0006 AT4G10250 154 / 1e-47 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [poplar] [flax] HSP20 PF00011 [poplar] [flax] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Potri.006G034600.1 pacid=42767996 polypeptide=Potri.006G034600.1.p locus=Potri.006G034600 ID=Potri.006G034600.1.v4.1 annot-version=v4.1 ATGGCTTCTTCACCCATGTTGTCTTTAACCAGAGTTATATCCTCAAAATCCCAACTTTTCAAACTCCTTCTCTTCTCCTCCACCCGCTCCTTCTCCTCCA CCCGCTTCCCCTCTACAACCGAACCTGATACAGACTCCACCACTGATTTCTCCTCTACAGATGAGGATGATGCTGCTGCTGATGCTGAGATTTATGGCCG TCCCCACCCTTTTGTCAAAGAAGGGCCAGAGTTGCTGTATGATCTGAAAGACGAGTTTGATGCCATATATGCAAGAGTGGACTTACCTGGGGTTAGCAAA GAAGGGGTAAAGATGTGGGTCAAAGATGATTCTATTTATGTTAGGGGTCAAGAAGTCAAGAAAGTGAGTCTTTATTCTAAAGAAGAGGAACCCAGGAAGT ATTCTTTCGAGATTGACCTTCCAAAGAACGAGTACAAGGCCGAGGACATTAGAGCTGTGATGGAGTCTGGTGTTCTTAGGGTTTTTGTGCCTAAAATCAA GCCCGAGGAGATTGATGATGCTTTTGTGATCAACATTGAGTGA
AA sequence Show only first row Show all	>Potri.006G034600.1 pacid=42767996 polypeptide=Potri.006G034600.1.p locus=Potri.006G034600 ID=Potri.006G034600.1.v4.1 annot-version=v4.1 MASSPMLSLTRVISSKSQLFKLLLFSSTRSFSSTRFPSTTEPDTDSTTDFSSTDEDDAAADAEIYGRPHPFVKEGPELLYDLKDEFDAIYARVDLPGVSK EGVKMWVKDDSIYVRGQEVKKVSLYSKEEEPRKYSFEIDLPKNEYKAEDIRAVMESGVLRVFVPKIKPEEIDDAFVINIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51440			HSP20-like chaperones superfam...		Potri.006G034600 [exp]	0	1
AT4G24975			Plant self-incompatibility pro...		Potri.017G144361 [exp]	3.00	0.8426
AT3G47570			Leucine-rich repeat protein ki...		Potri.011G103000 [exp]	5.83	0.7850
AT4G17980	NAC	ANAC071	NAC domain containing protein ...		Potri.019G099900 [exp]	9.21	0.7964
AT5G02580			Plant protein 1589 of unknown ...		Potri.006G213500 [exp]	14.17	0.8280
AT4G00231		MEE50	maternal effect embryo arrest ...		Potri.008G158901 [exp]	22.58	0.8249
AT3G12830			SAUR-like auxin-responsive pro...		Potri.003G070900 [exp]	23.32	0.8273	SAUR14
AT2G47260	WRKY	ATWRKY23, WRKY2...	WRKY DNA-binding protein 23 (....		Potri.014G118200 [exp]	27.27	0.8143
AT5G45540			Protein of unknown function (D...		Potri.001G146800 [exp]	36.48	0.8074
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Potri.010G079000 [exp]	37.81	0.7447	CIPK4.2
AT1G50460		ATHKL1, HKL1	hexokinase-like 1 (.1)		Potri.001G254800 [exp]	42.98	0.8035

Compare expression of checked genes

Potri.006G034600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.