Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56680 383 / 1e-132 Single-stranded nucleic acid binding R3H protein (.1) AT2G40960 353 / 3e-121 Single-stranded nucleic acid binding R3H protein (.1) AT3G10770 295 / 7e-99 Single-stranded nucleic acid binding R3H protein (.1.2) AT5G05100 292 / 1e-97 Single-stranded nucleic acid binding R3H protein (.1) AT5G33406 73 / 6e-14 hAT dimerisation domain-containing protein / transposase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G032500 [exp] 659 / 0 AT3G56680 375 / 1e-129 Single-stranded nucleic acid binding R3H protein (.1) Potri.008G021900 [exp] 205 / 3e-62 AT3G56680 192 / 4e-57 Single-stranded nucleic acid binding R3H protein (.1) Potri.010G237500 [exp] 186 / 1e-54 AT3G56680 171 / 4e-49 Single-stranded nucleic acid binding R3H protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027292 [exp] 502 / 7e-180 AT3G56680 329 / 8e-112 Single-stranded nucleic acid binding R3H protein (.1) Lus10038997 [exp] 495 / 5e-177 AT3G56680 327 / 5e-111 Single-stranded nucleic acid binding R3H protein (.1) Lus10043439 [exp] 179 / 7e-52 AT3G56680 178 / 3e-51 Single-stranded nucleic acid binding R3H protein (.1) Lus10034141 [exp] 178 / 1e-51 AT3G56680 177 / 3e-51 Single-stranded nucleic acid binding R3H protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01424 [poplar] [flax] R3H R3H domain PF12752 [poplar] [flax] SUZ SUZ domain
Representative CDS sequence Show only first row Show all	>Potri.006G034700.3 pacid=42767592 polypeptide=Potri.006G034700.3.p locus=Potri.006G034700 ID=Potri.006G034700.3.v4.1 annot-version=v4.1 ATGGACTCAACAACACAACAAGCAGTGGCGGCCATTAATGAGAAGGAGTCAATGGTGGATCCTTTCTTAGTTGAGGCTCTACAGAACCCGCGTCACCGTC TCACCATTTTGCGGATGGAACTTGATATCCAGAGGTTTTTGCAAAACCCTGATCAACAACTATTTGAATTCCAGCATTTCCCTACCTCCTACCTTAGGCT TGCAGCACATCGTGTCGCTCATCACTATGGGCTGATAACCATGGTACAGGATAATGGCATTGATGGTCTGGGAAATAAGATTCTGGTGCAGAAAACAGCT CAAAGCAGATATCCTGCAGTTTGCCTAACTGCAATTCCTGCGAAACAGTTGGAAAGTGATAAACCTGAGAAGATTAAGCTTGCCATTAGACCCAGGCCCA ACAAAGGGTCTATAAATGATCCAAATGGGTTTGGGGTCAAACGGAATCCTGTGAGAAGTGTGGAAGAGAGGAAGGAGGACTATGATAGGGCACGAGCTCG CATCTTCAGTAGCCCCAGCAGCCCCACTGCAGAAGATACTGTGCCTGAGCTCCCTACAGATAGCAAAAATTTAAGTTCAAGCAAGGATGAGAATGAAGAG AGTAGGAACTCTGTTGTTGATCCAGAAAAAAATGTCTTTATCAGGGACAGCATGTCATCTCGTGTTGCCATTTTCAGAGACAGGGAGAAGGATCGCACTG ACCCAGATTATGATCGGAGTTACGATAGGTATGTTAGGAGCCTTCCAGCTAATCAGAGTTTTAGCTTGACACCATTCAATATGCAGAAGATTCCACATCC TTTTATGCAGTATGATGCTGGTTTTCCTCAGATGGGTCAGATGCCAAGGACACAGGCTTCCCTTGGCTACCAGCCTGCTGCAGGCCCAGTTATGAGCCCC TTCTGTGCATTGGGATCAAATCAGACATCAAGGGATGCCGCCTATGTACAATGGCCAAGCGCTGCAATGATGTATGCACATTCATATGAGCAATTTAGAC ATGCTGCTTTCCAGGCTCCATTCTGTCAGCAACCTCTTAGCTTTGATTACTCTCAAAACCATTAA
AA sequence Show only first row Show all	>Potri.006G034700.3 pacid=42767592 polypeptide=Potri.006G034700.3.p locus=Potri.006G034700 ID=Potri.006G034700.3.v4.1 annot-version=v4.1 MDSTTQQAVAAINEKESMVDPFLVEALQNPRHRLTILRMELDIQRFLQNPDQQLFEFQHFPTSYLRLAAHRVAHHYGLITMVQDNGIDGLGNKILVQKTA QSRYPAVCLTAIPAKQLESDKPEKIKLAIRPRPNKGSINDPNGFGVKRNPVRSVEERKEDYDRARARIFSSPSSPTAEDTVPELPTDSKNLSSSKDENEE SRNSVVDPEKNVFIRDSMSSRVAIFRDREKDRTDPDYDRSYDRYVRSLPANQSFSLTPFNMQKIPHPFMQYDAGFPQMGQMPRTQASLGYQPAAGPVMSP FCALGSNQTSRDAAYVQWPSAAMMYAHSYEQFRHAAFQAPFCQQPLSFDYSQNH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56680			Single-stranded nucleic acid b...		Potri.006G034700 [exp]	0	1
AT1G17370		UBP1B	oligouridylate binding protein...		Potri.003G069000 [exp]	1.73	0.8242
AT3G56680			Single-stranded nucleic acid b...		Potri.016G032500 [exp]	1.73	0.8604
AT3G13460		ECT2	evolutionarily conserved C-ter...		Potri.001G002000 [exp]	2.44	0.8379
AT3G04470			Ankyrin repeat family protein ...		Potri.019G019700 [exp]	4.47	0.7782
AT1G55915			zinc ion binding (.1)		Potri.008G009700 [exp]	4.89	0.7721
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Potri.006G032100 [exp]	4.89	0.7811	RHC1.2
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Potri.010G243100 [exp]	6.48	0.7253	Pt-SGJ3.2
AT1G48170			unknown protein		Potri.008G099700 [exp]	6.92	0.7537
AT1G09815		POLD4	polymerase delta 4 (.1)		Potri.019G042900 [exp]	7.34	0.7527
AT3G03990			alpha/beta-Hydrolases superfam...		Potri.002G118900 [exp]	17.54	0.7010

Compare expression of checked genes

Potri.006G034700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.