Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03240 117 / 4e-32 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G14040 114 / 5e-31 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03260 110 / 1e-29 EXS (ERD1/XPR1/SYG1) family protein (.1) AT4G25350 107 / 1e-28 SHB1 SHORT HYPOCOTYL UNDER BLUE1, EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G35350 103 / 2e-27 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03250 102 / 8e-27 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G26730 100 / 3e-26 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G29060 89 / 3e-22 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G69480 87 / 3e-21 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G23430 75 / 4e-17 PHO1, ATPHO1 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G032900 [exp] 142 / 6e-41 AT1G14040 865 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165800 [exp] 120 / 4e-33 AT1G14040 1032 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165300 [exp] 119 / 6e-33 AT1G14040 1022 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G164900 [exp] 119 / 1e-32 AT1G14040 992 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G090400 [exp] 117 / 6e-32 AT1G14040 1037 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.017G086800 [exp] 99 / 1e-25 AT3G29060 853 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G090300 [exp] 85 / 1e-20 AT1G69480 831 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G169400 [exp] 77 / 9e-18 AT3G23430 1019 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.010G069000 [exp] 70 / 2e-15 AT3G23430 1069 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036779 [exp] 126 / 3e-35 AT1G14040 1080 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10037147 [exp] 126 / 5e-35 AT1G14040 1071 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10026623 [exp] 120 / 4e-33 AT1G14040 1058 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030439 [exp] 120 / 7e-33 AT1G14040 1127 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036781 [exp] 112 / 8e-31 AT1G14040 561 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030438 [exp] 103 / 4e-27 AT1G14040 976 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10000203 [exp] 101 / 1e-26 AT1G14040 610 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030440 [exp] 101 / 2e-26 AT1G14040 1048 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10019230 [exp] 81 / 4e-19 AT1G69480 676 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10004285 [exp] 73 / 1e-16 AT1G69480 467 / 4e-160 EXS (ERD1/XPR1/SYG1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0182 [poplar] [flax] IT PF03124 [poplar] [flax] EXS EXS family
Representative CDS sequence Show only first row Show all	>Potri.006G035100.2 pacid=42769031 polypeptide=Potri.006G035100.2.p locus=Potri.006G035100 ID=Potri.006G035100.2.v4.1 annot-version=v4.1 ATGGCTGGGATATTCTCAGTAACTGCAGCTATCTATGGAACATACTGGGACCTAGTCATGGACTGGGGGCTCCTGCAATTTAAGTCGAAGAACTGGTTGC TAAGAGACAAACTTCTTATTCCATACCGAAGTGTGTATTTTGGAGCAATGGTCCTGAATGTATTGCTGAGATTTGCCTGGTTGCAAACTGTCCTGAACTT CCAGGTATCTTTCCCACATGCTCAAACCTTAAGCGCAATTGTTGCCAGCCTAGCGGATTATGGAACTTTTTCAGATCAAGTTGGAGAATGA
AA sequence Show only first row Show all	>Potri.006G035100.2 pacid=42769031 polypeptide=Potri.006G035100.2.p locus=Potri.006G035100 ID=Potri.006G035100.2.v4.1 annot-version=v4.1 MAGIFSVTAAIYGTYWDLVMDWGLLQFKSKNWLLRDKLLIPYRSVYFGAMVLNVLLRFAWLQTVLNFQVSFPHAQTLSAIVASLADYGTFSDQVGE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03240			EXS (ERD1/XPR1/SYG1) family pr...		Potri.006G035100 [exp]	0	1
AT4G20040			Pectin lyase-like superfamily ...		Potri.003G075400 [exp]	1.00	0.8603
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Potri.013G045200 [exp]	8.12	0.8318
AT2G31083		AtCLE5, CLE5, C...	CLAVATA3/ESR-RELATED 5 (.1)		Potri.011G063750 [exp]	10.77	0.8344
AT5G23260	MADS	ABS, TT16, AGL3...	TRANSPARENT TESTA16, AGAMOUS-l...		Potri.015G125501 [exp]	11.40	0.8042
					Potri.003G109601 [exp]	15.00	0.7800
AT1G17030			unknown protein		Potri.001G381600 [exp]	23.23	0.7047
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.007G119400 [exp]	23.87	0.7798
AT3G04945		LCR18	low-molecular-weight cysteine-...		Potri.013G032700 [exp]	29.29	0.7985
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.001G440200 [exp]	30.39	0.7818
AT3G24310	MYB	MYB305, ATMYB71	MYB DOMAIN PROTEIN 71, myb dom...		Potri.010G064000 [exp]	32.61	0.7628	Pt-MYB305.2

Compare expression of checked genes

Potri.006G035100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.